1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacacacaaactaattatgctctgtttttcttcaatcttctcccctgtttttgtctgaaatgaaaatgcctctgcttgatcttgcattctgatctgatttgtttttttcaactgattctctttcag
species | Oryza sativa |
transcript | LOC_Os08g03350.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|4716501|gb|AU057617.1|AU057617
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|89162523|gb|CI099215.1|CI099215
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|86598121|gb|CI278511.1|CI278511
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|89164964|gb|CI102052.1|CI102052
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|86853761|gb|CI250012.1|CI250012
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATACTCATGATCCTGTCACCAATCGGAGGAEST: gi|88245570|gb|CI245419.1|CI245419
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|86497707|gb|CI140340.1|CI140340
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|29630538|gb|CB635547.1|CB635547
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|88247938|gb|CI247787.1|CI247787
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|4716084|gb|AU057200.1|AU057200
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|89177928|gb|CI391107.1|CI391107
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|88901693|gb|CI001801.1|CI001801
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGAEST: gi|88243108|gb|CI244230.1|CI244230
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
EST: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG ATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
genomic: TAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacac ... tctctttcagATCTGCATCATTCTTGGAGTGATGCTCATGATCCTGTCACCAATCGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGGgtaagaacacacaaactaattatgctctgtttttcttcaatcttctcccctgtttttgtctgaaatgaaaatgcctctgcttgatcttgcattctgatctgatttgtttttttcaactgattctctttcag
- - - - - - - - - - - - - - - - - AAGAAG