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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag

Basic information

species Oryza sativa
transcript LOC_Os08g02330.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G456149_T01 (Zea mays), 5'ss of exon 7
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag
|||||| ||| |||| ||||||| ||||||||||||||| ||||  || ||||| ||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   | |  ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||||            
TGCTCTGAATCTGTCAGGAACCGAGCTTGGATATTATCCAGTCAATGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttcccgaaccaacatccttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgattttctg-----------

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 3
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag
|||||| ||| |||| |||| |||||||||||||||||||||||  || || |||||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   |    ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   || |||
TGCTCTGAATCTGTCAGGAAACGTGCTTGGATATTATCCTGTCAATGTTCTACCATCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttctggaaccaacatgcttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgat-tttctgtgctctccag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G175541_T01 (Zea mays), 5'ss of exon 1
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag
|||||| ||| ||||  |||||||||||||||||||||||||||  || ||||| ||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   | |  ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   || |||
TGCTCTGAATCTGTCAAGAACCGTGCTTGGATATTATCCTGTCAATGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACAAAACATTCCTACCCAGGgtatgcaaacctttcggaaccaacatgcttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatatg-atatggtctctaagaaagttggtcgat-tttctgtgctctacag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G173428_T02 (Zea mays), 5'ss of exon 4
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattca-tgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag
|||||| ||| |||| ||||| ||||| |||||||||||||||||||| |||||||| |||||||| |||||||| || || |||||||| || ||||||||| ||  || || ||  | |||   || |||  | || |||||     |              |  || || |   ||  ||   |    || |  ||||| | |||    ||  |||   ||||||
TGCTCTGAATCTGTCAGGAACTGTGCTCGGATATTATCCTGTCAGGGTTCTGCCATCGAAAACTGCCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgc--aaccttcaggaatcaacatacttgtgttaagttcatagccca--------------aggttcattcttgtatctg-gtatggtatttaaaaaagtttgccatt-tttctgtgatctgcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G457231_T01 (Zea mays), 5'ss of exon 7
-TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa-aagctggcccccattcttgttgcctgcag
 ||| || ||| |||| ||||||||||||||||||||||||||||  || ||||| |||||| |||| |||||||| || ||   |||||| || |||| |||| ||  |   | || ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | ||||| ||  | |  |   ||  |||   ||||||
CTGCCCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTGTCAATGTTCTGCCGTCAAAA-CTGCCATTGCACCAGTCAAAGAAACATTCCTACCCATGgtatgcaaaccttccagaaccaacatgcttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatttg-atatggtctctaagaaaattggtcgattttctgtgctctgcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G398795_T01 (Zea mays), 5'ss of exon 7
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag
|||||| ||| |||| ||||||||||||||||||||||||||||  || || || ||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   |    ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   || |||
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTGTCAATGTTCTACCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttctggaaccaacatgcttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgat-tttctgtgctctacag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G044246_T01 (Zea mays), 5'ss of exon 1
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag
|||||| ||| |||| |||||||||||||||||||||||| |||  || ||||  ||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   | |  ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   ||||||
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTATCAATGTTCTGCTGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccaacatgcttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgat-tttctgtgctctgcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G349794_T01 (Zea mays), 5'ss of exon 6
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag
|||||| ||| |||| |||| | |||||||||||||||||||||  || || || ||||||||||| |||||||| || ||   |||||| || ||||||||| ||  |   |  | ||   |  |   ||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   || |||
TGCTCTGAATCTGTCAGGAAACATGCTTGGATATTATCCTGTCAATGTTCTACCGTCAAAAACTGCCATTGCACCAGTCAATGAAACATTCCTACCCAGGgtatgcaaatcttctagaaccaacatgcatgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgat-tttctgtgctctccag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G376619_T01 (Zea mays), 5'ss of exon 5
-------TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTA----TCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatt------tgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag-----------------
        |      || ||| |||| ||    |  |   |||    | || |||  | | |  ||   |  |  |  ||   | |  |  | |||||  |  | |     ||  ||| | ||||   |||  || || |       |  | ||   |||   |    |  |            |  |   |||  ||    | | | ||  |  |   |  ||        |  | ||  ||                  
GTTGTGGAGTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTT--CACTGATGAGGgtaat-atatccat--atccaaccatgtttc----agtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccg-tgcttggatattatcctatcaatgttctaccgtcaaaaactgcattgcaccag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G036634_T01 (Zea mays), 5'ss of exon 14
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattctt--gttgcctgcag
|||||| ||| |||| ||||| |||||  ||||||||||||||||||| ||||||||||||||||| |||||||| || || ||||||||  | ||||||||| ||  || || ||  | |||         | | | ||  || | | ||| |   |||| |   || ||||   |   ||      || | | |||||   |    ||||| ||  ||   ||||||
TGCTCTGAATCTGTCAGGAACTGTGCTCAGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTGCCATTGCACCAGTCAATCCAACATTCGTACCCAGGgtatgc--aaccttcaggaatca---------acatactttgttttaagttcatggctcaagg---ttcatgcttgtttctg---gtatgctctttaaaaaaagtttgccatttttctgtgatctgcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G161649_T01 (Zea mays), 5'ss of exon 3
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtg-tacacctgatgtctaaaagctggcccccattcttgttgcctgcag
|||||| ||| | || ||||| ||||| |||||||||||||||||||| ||||||||||||||| | |||||||| || || |||||||| || ||||||||| ||  || || ||  | |||         | | | ||  || | | ||| |   |||| |   || ||||   |   || ||  |    |    | |   ||||     ||  |||   ||||||
TGCTCTGAATCTATCAGGAACTGTGCTCGGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTACCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgc--aaccttcaggaatca---------acatactttgttttaagttcatggctcaagg---ttcatgcttgtttctggtatgctctttaaaaagagtttggcatt--tttctgtgatctgcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G132286_T01 (Zea mays), 5'ss of exon 4
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtg-tacacctgatgtctaaaagctggcccccattcttgttgcctgcag
|||||||||| |||| |||||  |||| |||||||||||||||||||| ||||||||||||||||| |||||||| || || |||||||| || ||||||||| ||  || || ||  | |||         | | | ||  || | | ||| |   |||| |   || ||||   |   || ||  |    |    ||||| | |||    ||  |||   ||||||
TGCTCTAAATCTGTCAGGAACTATGCTCGGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTGCCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgc--aaccttcaggaatca---------acatactttgttttaagttcatggctcaagg---ttcatgcttgtttctggtatgctctttaaaaaaaagtttgccatt-tttctgtgatctgcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G166091_T01 (Zea mays), 5'ss of exon 7
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag
|||||  ||| ||||  |||||||||||||||||||||||||||  || ||||| ||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   | |  || | |  |  |||  | || ||||||  |           |||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   ||||||
TGCTCCGAATCTGTCAAGAACCGTGCTTGGATATTATCCTGTCAATGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaactaacatgcttgtcttaagttcattgct-----------caatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgat-tttctgtgctctgcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G069102_T01 (Zea mays), 5'ss of exon 5
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag
|||||| ||| |||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   | |  ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  |||||||      ||  |||   ||||||
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTGTCAAGGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccgacatgcttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagctggttgtt-tttctgtgctctgcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA06G14030.2 (Glycine max), 5'ss of exon 7
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag
|||| | ||  |||| |||||| ||||||||||||| ||  | || ||||| || ||||||||||| ||||| |||||||| ||||||||| ||||||||||||  ||  ||| |    ||     | |||| ||  || ||||  |||    |  || |    | |   ||  ||| | | |    ||   |||| |   ||  |   |  |  | |      |||
TGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGgtaa--tgtttcttctttgttag---agttgccta--ttacatt--taaaagatgattgaccagagtagctgataatgcatct----ctttggtctgac--ctatctaacggtgctatatttctcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA02G35640.1 (Glycine max), 5'ss of exon 6
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag
     | ||  |||| |||||| ||||||||||||| ||  | || ||||| || ||||||||||| ||||  |||||||| ||||||||| ||||||||||||  ||  ||| |    ||     | |||| ||  || ||||  |||    |  || | |  | |   ||  ||| | | |    ||   |||| |   ||  |      |  | |      |||
-----TGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGTCCCTGTTAATCCAACATTTTTGCCCAGGGTAA--Tgtttcttctttgttag---agttgccta--ttacatt--taaaagatgattgactagagtagctgataatgcatct----ctttggtctgac--ctatctaatggtgctatatttctcag

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag
|||| | |   |||| || ||| ||||||||||||| ||  | || ||||| || ||||||||||| |||||||| || || ||||||||| ||||||||||||  |   ||||  ||       ||||  |||  |||  |  || |||    ||   | ||||     |   ||| | |||  |||   | |||||  |   ||     ||||            
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttttctgttcatgatgcctatt-acatgtattagaagatgaatgaccat---agtgaac----taacaatgcttgt-tacc---tttctaatggt--gctgtatttctcag---------

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA04G40760.1 (Glycine max), 5'ss of exon 7
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaa-atttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag
|||| | ||  |||| |||||| ||||||||||||| ||  | || || || || || |||||||| ||||| |||||||| ||||||||| ||||||||||||  ||  ||| |    ||     | |||| ||  || ||||   ||   | |    | |      | |||||  ||  |      ||||  | |  ||    ||     ||||            
TGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTACTACCTTCGAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGgtaa--tgtttcttctttgttag---agttgccta--ttacatttagaagattgaccagagtagctgataatgcatctattt---tgtctgacctatctaatggtgctatatttctcag---------

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag
|||| | |   |||| || ||| ||||||||||||| ||  | || ||||| || ||||||||||| |||||||| || || ||||||||| |||||||||||   |   |  |  ||       |||| ||||  |||  |  || |||    ||   | ||||     |   ||| | ||   |||   | |||||  |   ||     ||||            
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgttttttggttcatgatgcctatt-gcatgtattagaagatgaatgaccat---agtgaac----taacaatgcttgc-tacc---tttctaatggt--gctgtatttctcag---------

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag
|||||| | |||| |||||||  ||||||| |||||||| || || ||||| || ||||||||||| |||||||||||||||||||||||| |||| ||||| ||        | | | ||  |||           | || || ||   ||||||         ||| ||   |  |  | |||   | |   ||  |    |||  | ||  |            
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgaga-------gtatattttttgtggccaatcttttatctttgtttgatcttatc--------attcatatga-catatttactttttagaactggatataggctacaatgatg-----------

upper sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 6
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag
|||| | | | || | || ||  |||||||||| || ||||| |||||||||||||| ||||| || |||||||| |||||||| |||||| |||| ||||| ||     |   ||  ||    || ||    |        ||   ||||    |||   |||| ||| |       | |    || ||||||    |   ||| |  ||                
TGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACCCTGTGAGGGTGCTGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGgtgagaaactttgccattatgatcgttttcattttccaaaatttgaaaattggagttttggtgaagtttct-----ctcctaataacatgatgttggtactttggacttcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86899176|gb|CI298078.1|CI298078
EST:     TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGG                         TCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
genomic: TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaa ... ttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
EST: gi|86495223|gb|CI137856.1|CI137856
EST:     CCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGG                         TCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
genomic: CCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaa ... ttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
EST: gi|86849377|gb|CI297825.1|CI297825
EST:     TGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGG                         TCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
genomic: TGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaa ... ttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
EST: gi|29646834|gb|CB651841.1|CB651841
EST:     TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGG                         TCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
genomic: TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaa ... ttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
EST: gi|29643786|gb|CB648793.1|CB648793
EST:     TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGG                         TCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
genomic: TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaa ... ttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
EST: gi|29646833|gb|CB651840.1|CB651840
EST:     TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGG                         TCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
genomic: TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaa ... ttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
EST: gi|86859325|gb|CI278774.1|CI278774
EST:     TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGG                         TCCGATGATGAGCGT-AGATGTGTGCAAGGACTATTTACTGCACAAACATT
genomic: TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaa ... ttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
EST: gi|218493611|gb|FG968673.1|FG968673
EST:     TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGG                         TCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT
genomic: TGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaa ... ttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 60 (upstream exon), 75 (downstream exon)
Score: 82

TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaa ... ttgcctgcagTCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAG




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