1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGgtaattgacagaggcaataaaatgtctttgaatgtatttttgctttgcttacaaaacttacgatgagctttcaaattcgtag
species | Oryza sativa |
transcript | LOC_Os08g02140.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGG GTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGEST: gi|89162243|gb|CI104571.1|CI104571
genomic: CAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGgtaattgaca ... aaattcgtagGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTG
EST: CAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGG GTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGEST: gi|89166204|gb|CI103294.1|CI103294
genomic: CAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGgtaattgaca ... aaattcgtagGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTG
EST: CAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGG GTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGEST: gi|88902712|gb|CI088250.1|CI088250
genomic: CAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGgtaattgaca ... aaattcgtagGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTG
EST: CAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGG GTGGGGAAGTTTGATTCTGTGACCCGTGAGACACTTGAACCACACCAACTG
genomic: CAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGgtaattgaca ... aaattcgtagGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGgtaattgacagaggcaataaaatgtctttgaatgtatttttgctttgcttacaaaacttacgatgagctttcaaattcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG