1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCAAATTCTGTTATTACCCCTTTGTTTGAGAAAATGTTAAGTGCTAGTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAGgtgagttattcagttatcgttttaaactgtcttttcttttattagattgtattactgaactgtttattatgctaggcttgccatgcatgggatctgccct...
species | Oryza sativa |
transcript | LOC_Os07g37610.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAG GCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAGEST: gi|29615465|gb|CB620477.1|CB620477
genomic: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAGgtgagttatt ... tttcgaatagGCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAG
EST: TGTTGCCAAAGACTTGTGCTGAG GCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAGEST: gi|58662796|gb|CK051482.1|CK051482
genomic: TGTTGCCAAAGAAATGTGCTGAGgtgagttatt ... tttcgaatagGCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAG
EST: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAG GCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAGEST: gi|58668424|gb|CK057110.1|CK057110
genomic: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAGgtgagttatt ... tttcgaatagGCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAG
EST: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAG GCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAGEST: gi|33677354|gb|CF305593.1|CF305593
genomic: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAGgtgagttatt ... tttcgaatagGCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAG
EST: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAG GCGTACTTCCCTGCCATCTCTCEST: gi|29681679|gb|CB677954.1|CB677954
genomic: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAGgtgagttatt ... tttcgaatagGCGTACTTCCCTGCCATCTCTC
EST: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAG GCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAG
genomic: GTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAGgtgagttatt ... tttcgaatagGCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAAATTCTGTTATTACCCCTTTGTTTGAGAAAATGTTAAGTGCTAGTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAGgtgagttattcagttatcgttttaaactgtcttttcttttattagattgtattactgaactgtttattatgctaggcttgccatgcatgggatctgccct
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA