1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCGTAACTTGCTTGCAAAGGGTGCGTTTGCTGCCCAAATGATTGATCTTGGACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagcttaccaaggcttttgatttcaatttttgcattgacaggatataattcataccatctttatatctgaagcatagtttgaagcaaaatatttc...
species | Oryza sativa |
transcript | LOC_Os07g36470.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAG GATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTTEST: gi|38479045|gb|CF963178.1|CF963178
genomic: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTT
EST: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAG GATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTTEST: gi|38483054|gb|CF966856.1|CF966856
genomic: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTT
EST: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAG GATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTTEST: gi|29688877|gb|CB685152.1|CB685152
genomic: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTT
EST: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAG GATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTTEST: gi|58684033|gb|CK072720.1|CK072720
genomic: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTT
EST: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAG GATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTTEST: gi|11442551|gb|BF430454.1|BF430454
genomic: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTT
EST: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAG GATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTTEST: gi|58682821|gb|CK071508.1|CK071508
genomic: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTT
EST: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAG GATTTATTAGATGCGCTGAATCAGCTAGAAATAGEST: gi|218495142|gb|FG957786.1|FG957786
genomic: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATTTATTAGATGCGCTGAATCAGCTAGAAATAG
EST: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAG GATTTATTAGATGCGCTGAATCAGCTAGAACTAGGACTCAAAGACAACCTTEST: gi|58687201|gb|CK075888.1|CK075888
genomic: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTT
EST: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAG GATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTT
genomic: GACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagct ... atgcacccagGATTTATTAGATGCGCTGAATCAGCTAGAAATAGGACTCAAAGACAACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGTAACTTGCTTGCAAAGGGTGCGTTTGCTGCCCAAATGATTGATCTTGGACTGCCACACATAGTACAGAATTTGAAAGCTCAAGCATGGACTGATGAGgtgaggagcttaccaaggcttttgatttcaatttttgcattgacaggatataattcataccatctttatatctgaagcatagtttgaagcaaaatatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
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