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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGGTTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGAAAgtactcaatagtttattatgtctcctctagcttccttgcctggtctgatgcagcattgcctataatttattcactagtaacgtttcaagttaggagaatgttgcaaaaccgtcatggtgaattttgaggcaatgtgctgtaacagttcactcaattcagacatgatactgcag

Basic information

species Oryza sativa
transcript LOC_Os07g30800.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g30800.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G488458_T01 (Zea mays), 5'ss of exon 5
----ATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGGTTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGAAAgtactcaatagtttattatgtctcctctagcttccttgcctggtctgatgcagcattgcctataatttattcactagtaacgtttcaagttagga-gaatgttgcaaaaccgtcatggtgaattt--tgaggcaatgtgctgtaacagttcac---tcaattcagacat-gatactgcag
    ||||||||||||||||  |||| || || |||||||||||||| ||||||||||| ||||| ||||||||||||||||||  |||||| |||||||||||||| ||| |   | | ||  | |   |    | |  ||  |   ||    ||  |||     |  ||  |  |   |     ||| |||  |    ||   ||| || |  |   || |||||||  || |  |  |   ||||| || ||||   ||| |  ||| || |||||| |||
CATTATGTGGGCTACAATGAAGCAGGACGAAGAATAGATAGCACCTATATTCAGGGTTCCCCTGCAAAAATTCGGTTAGGGAACGGAACACTAGTTCCAGgaaagtattcactgtctcaatagttttttcccctatgctctgattcagctac--cactattcttactgcttgctggagctgcttttttttaagccaatttgagaattgaaatattgctctgatgaatttgttgggatatggaattgtaatagatcacatctcattctagatattgatacttcag