1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAATGTGTATGCCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAGgcaagttcctttcctgctgtagacaactatctaaagtaggttgtagcctatgacattccacaggcctaagatttcttctttactaaattgcag
species | Oryza sativa |
transcript | LOC_Os07g30790.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAG GCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAGEST: gi|58601816|gb|CK012344.1|CK012344
genomic: GAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAGgcaagttcct ... taaattgcagGCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAG
EST: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAG GCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAGEST: gi|88539583|gb|CI469547.1|CI469547
genomic: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAGgcaagttcct ... taaattgcagGCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAG
EST: CCCTGCTATCCAG GCATGGGCACGGTACACTCGGAGGGGAGGCAACTTGCCTATCACTGACAGEST: gi|58695091|gb|CK083778.1|CK083778
genomic: CCCTGCTATCCAGgcaagttcct ... taaattgcagGCATTGGCACGGTACACTCGGA-GGGAGGCAACTTGCCTATCACTGACAG
EST: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAG GCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAGEST: gi|88472230|gb|CI409501.1|CI409501
genomic: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAGgcaagttcct ... taaattgcagGCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAG
EST: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAG GCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAGEST: gi|58595057|gb|CF993365.1|CF993365
genomic: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAGgcaagttcct ... taaattgcagGCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAG
EST: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAG GCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAGEST: gi|88201000|gb|CI201355.1|CI201355
genomic: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAGgcaagttcct ... taaattgcagGCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAG
EST: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAG GCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAG
genomic: CCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAGgcaagttcct ... taaattgcagGCATTGGCACGGTACACTCGGAGGGAGGCAACTTGCCTATCACTGACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGTGTATGCCGACGAAGGTTCAGAGGCTATGGATGCAGCAGCTGTCCCTGCTATCCAGgcaagttcctttcctgctgtagacaactatctaaagtaggttgtagcctatgacattccacaggcctaagatttcttctttactaaattgcag
- - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - CAGCTG