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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAGAACTTGCAGCAAAACGATGCCCGGATCTCTGGGCTACGAGGACATCGATGCTAAGACATTTGCATCATGGgtaatccgttgtacagaactttctaggcataaatgccatatgtgactctgcatgtttctgttaatcatacatacatacatgcatgtccgaaatttattcc...

Basic information

species Oryza sativa
transcript LOC_Os07g26900.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g26900.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G146463_T03 (Zea mays), 5'ss of exon 7
CTCAAGAACTTGCAGCAAAACGATGCCCGGATCTCTGGGCTACGAGGACATCGATGCTAAGACATTTGCATCATGGgtaatccgttgtacagaactttctaggcataaatgccatatgtgactctgcatgtttctgttaatcatacatacatacatgcatgtccgaaatttattcc---------
  |||||||||||||||| | |||||| |||||||||||||||||||| |  ||||||||||  ||||| |||||||||        |||   |   |  |    |  |   ||| ||  | |    |   || | | |  ||| |  | |      | |||| |   || | | |         
GACAAGAACTTGCAGCAACAGGATGCCTGGATCTCTGGGCTACGAGGAGAGGGATGCTAAGATGTTTGCGTCATGGgta------catactagatactacacatgttga-aacatctgacagttcttagacttttttcagacatcctcagactagaccttgtcgg--tttcagttcacaagtaga