1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAGgtctgccacgttccactttttctgtgttttgctgcattcttttatttatttattttgttgccatgtattatttattttattgccatgttcatcaatttgagatttttcag
species | Oryza sativa |
transcript | LOC_Os07g25710.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAG GTTCTTCAGAAAAGAAGGCAGCCTCAAAAGAGGACATACCATCAATAGATCEST: gi|88272430|gb|CI386285.1|CI386285
genomic: AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAGgtctgccacg ... gatttttcagGTTCTTCAGAAAAGAAGGCAGCCTCAAAAGAGGACATACCATCAATAGATC
EST: AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAG GTTCTTCAGAAAAGAAGGCAGCCTCAAAAGAGGACATACCATCAATAGATCEST: gi|58685772|gb|CK074459.1|CK074459
genomic: AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAGgtctgccacg ... gatttttcagGTTCTTCAGAAAAGAAGGCAGCCTCAAAAGAGGACATACCATCAATAGATC
EST: AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAG GTTCTTCAGAAAAGAAGGCAGCCTCAAAAGAGGACATACCATCAATAGATC
genomic: AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAGgtctgccacg ... gatttttcagGTTCTTCAGAAAAGAAGGCAGCCTCAAAAGAGGACATACCATCAATAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAGgtctgccacgttccactttttctgtgttttgctgcattcttttatttatttattttgttgccatgtattatttattttattgccatgttcatcaatttgagatttttcag
- - - - - CAGCTC
- - - - - - - - - - - - - - - - - CTGAAG