1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGTTGCAGTGAGAAGGGTTATGATTATATGTCAATAGCTGAAGCAAGACAAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctcttcctcccctctatttatgtgcctctcgtcaatttacatgatataaaccctgtatttaatgtggtgttacag
species | Oryza sativa |
transcript | LOC_Os07g25420.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|87030789|gb|CI362003.1|CI362003
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88242415|gb|CI242264.1|CI242264
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|3768363|gb|AU032390.1|AU032390
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGNAATGGGANGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCEST: gi|88265472|gb|CI376374.1|CI376374
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTG-AATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGC
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|86882434|gb|CI325824.1|CI325824
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTTACAAAGAATTGCACCAGTACATCGCAGAG GAGGCACCCTGAATGGGAGATAAAGGATGGTTCCGTCTTCTTCCAGAAGGCEST: gi|88967640|gb|CI016155.1|CI016155
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGA-GCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGC
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|86825976|gb|CI362421.1|CI362421
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|89171152|gb|CI109676.1|CI109676
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|29658342|gb|CB654617.1|CB654617
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88502687|gb|CI430193.1|CI430193
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88970272|gb|CI383774.1|CI383774
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|33692357|gb|CF320596.1|CF320596
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|11564833|gb|AU165469.1|AU165469
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTNTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCNCCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|86593641|gb|CI266321.1|CI266321
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88242186|gb|CI242035.1|CI242035
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|11173082|gb|AU164604.1|AU164604
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCANAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|427819|gb|D23958.1|D23958
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCEST: gi|88846890|gb|CI005869.1|CI005869
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAA-TGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGC
EST: CTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88438546|gb|CI543650.1|CI543650
genomic: CTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88906164|gb|CI375236.1|CI375236
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|55409084|gb|CV721460.1|CV721460
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88465311|gb|CI529531.1|CI529531
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCTTCTTCTTCCAGAAGGCGEST: gi|88319141|gb|CI513205.1|CI513205
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: CAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88217449|gb|CI217298.1|CI217298
genomic: CAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88838745|gb|CI376283.1|CI376283
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|11564870|gb|AU165506.1|AU165506
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88466616|gb|CI532423.1|CI532423
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88456734|gb|CI544671.1|CI544671
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88478743|gb|CI416014.1|CI416014
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|33819691|gb|CF335664.1|CF335664
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|89175697|gb|CI042718.1|CI042718
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88832548|gb|CI008144.1|CI008144
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|86419374|gb|CI054175.1|CI054175
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCGEST: gi|88443951|gb|CI552496.1|CI552496
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
EST: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAG GAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
genomic: AAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctc ... ggtgttacagGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTGCAGTGAGAAGGGTTATGATTATATGTCAATAGCTGAAGCAAGACAAGTGCTGATGTTCAGCTCTGACAAAGAATTGCACCAGTACATCGCAGAGgtaattgctcttcctcccctctatttatgtgcctctcgtcaatttacatgatataaaccctgtatttaatgtggtgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA