1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TGGACAGATAGCTTCAGCAAGATCTTTCTCAAGCAGTGCAGgtactttacttacgtgttttatgccctttaattgcgataacttcataaaataaccaggatattgcaaagtagctgttcagtccttttggttgtcatgttt...
species | Oryza sativa |
transcript | LOC_Os07g22720.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGACAGATAGCTTCAGCAACATCTTTCTCAAGCAGTGCAG ACCTGCCACCACATCAGGAAATAGGGATGCCATCACTCTCTCCTACAATGAEST: gi|58665439|gb|CK054125.1|CK054125
genomic: TGGACAGATAGCTTCAGCAAGATCTTTCTCAAGCAGTGCAGgtactttact ... tttattccagACCTGCCACCACATCAGGAAATAGGGATGCCATCACTCTCTCCTACAATGA
EST: GTCATGTGGACAGATAGCTTCAGCAAGATCTTTCTCAAGCAGTGCAG ACCTGCCACCACATCAGGAAATAGGGATGCCATCACTCTCTCCTACAATGAEST: gi|29636053|gb|CB641062.1|CB641062
genomic: GTCATGTGGACAGATAGCTTCAGCAAGATCTTTCTCAAGCAGTGCAGgtactttact ... tttattccagACCTGCCACCACATCAGGAAATAGGGATGCCATCACTCTCTCCTACAATGA
EST: TGGACAGATAGCTTCAGCAAGATCTTTCTCAAGCAGTGCAG ACCTGCCACCACATCAGGAAATAGGGATGCCATCACTCTCTCCTACAATGA
genomic: TGGACAGATAGCTTCAGCAAGATCTTTCTCAAGCAGTGCAGgtactttact ... tttattccagACCTGCCACCACATCAGGAAATAGGGATGCCATCACTCTCTCCTACAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACAGATAGCTTCAGCAAGATCTTTCTCAAGCAGTGCAGgtactttacttacgtgttttatgccctttaattgcgataacttcataaaataaccaggatattgcaaagtagctgttcagtccttttggttgtcatgttt
- - - - - - - AGCAAG
- - - - - - - - GCAAGA