Sequence
atgc intronic sequence ATGC exonic sequenceAACTTCCTCTTCAAATCAACCAAAGAGGACTCATCCCTCAAGGCTACAGATTTTGGTCTTTCAGATTTTATAAGACCAGgtttgtgtgtatgttgtaactacttgttctattgttttcttgtttaactttcttccattccatatgaaatataaaagagaaaaatctctatttggccttg...
Basic information
species | Oryza sativa |
transcript | LOC_Os07g22710.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g22710.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G365035_T01 (Zea mays), 5'ss of exon 5
AACTTCCTCTTCAAATCAACCAAAGAGGACTCATCCCTCAAGGCTACAGATTTTGGTCTTTCAGATTTTATAAGACCAGgtttgtgtgtatg-----ttgtaactacttgttctattgttttct-tgtttaactttcttccattccatatgaaatataaaagagaaaaatctctatttggccttg-------
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AACTTCCTATTCAAATCAAAAAAGGAGGACTCGCCCCTTAAGGCTACAGATTTTGGTCTTTCAGACTTCATAAAACCAGgtgcatgcatgcacatgtttttaacttaatgttctgtagttttccctgtttgactt--ttgcagtatgtgttagttataggttacacttaactattgttgcttgcaatcacag
upper sequence: LOC_Os07g22710.3 (Oryza sativa), 5'ss of exon 4
lower sequence: AT4G36070.1 (Arabidopsis thaliana), 5'ss of exon 5
AACTTCCTCTTCAAATCAACCAAAGAGGACTCATCCCTCAAGGCTACAGATTTTGGTCTTTCAGATTTTATAAGACCAGgtttgtgtgtatgttgtaactacttgttc-tattgttttcttgtttaactttcttccattccatatgaaatataaaagagaaaaatctctatttggccttg
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AATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGgtaaaagtttcacttgtcaagtcttgtccctgagagcagaatggtagataatggaggtgattttgtgaaa-atggcag-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58682948|gb|CK071635.1|CK071635EST: CTCATCCCTCAAGGCTACAGATTTTGGTCTTTCAGATTTTATAAGACCAG GGAAACACTTTCGTGACATTGTTGGAAGTGCCTACTATGTAGCACCAGAAG
genomic: CTCATCCCTCAAGGCTACAGATTTTGGTCTTTCAGATTTTATAAGACCAGgtttgtgtgt ... gcactcacagGGAAACACTTTCGTGACATTGTTGGAAGTGCCTACTATGTAGCACCAGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACTTCCTCTTCAAATCAACCAAAGAGGACTCATCCCTCAAGGCTACAGATTTTGGTCTTTCAGATTTTATAAGACCAGgtttgtgtgtatgttgtaactacttgttctattgttttcttgtttaactttcttccattccatatgaaatataaaagagaaaaatctctatttggccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa