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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAGgtatgtgttatggtcactctgttgacttggaccttgatgatttcagtaatatttacagtagtgagatgttcttgttttcacgtttttag

Basic information

species Oryza sativa
transcript LOC_Os07g22400.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G130351_T01 (Zea mays), 5'ss of exon 5
AGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAGgtatgtgttatggtcactct---gttgac----ttggaccttgatgatt---tcagtaatatttacagtagtgagatgttcttgttttcacgtttttag
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AGGATGCTTATGACTGAGTTTCAACTGCCATACAAAGCATTGCCACACTCAGAATTCGAGgtatagactttggcatcttcatggttaacaatgtacaactgcagcgtttggctttttcctgtttgctttgcaaagtgattttcttttttgtgttctag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58665435|gb|CK054121.1|CK054121
EST:     TGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAG                         GCTGTCAAAGACAAGTTGAGCCAAGTTGCACGCACCATTGGTCAATCTGCA
genomic: TGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAGgtatgtgtta ... acgtttttagGCTGTCAAAGACAAGTTGAGCCAAGTTGCACGCACCATTGGTCAATCTGCA