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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaattggcactaacttccacag

Basic information

species Oryza sativa
transcript LOC_Os07g03140.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g03140.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 3
GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaattggcactaacttccacag
|| | || | | |||||| ||     | || |   | ||  |||   | || || ||||| ||||| ||||||||||||||||| || ||  |||||||||||||     || | |||  | | |||  | | |   ||  |     || | || | || | |   |   |   ||   ||| |  |  |  | |   ||||         
GTCACTTATTTGTCGGTTAGAAGAAGTAGACCCCGGCAGGTTGAAGCACGAGGAGAAGATAGCTTTTTGGATCAACATACACAATGCTTTAGTGATGCATgtaat-----ttattatt--atactatcaagaatatgtttcagtg--taatatttttcccatttgattagttgtgttataatttgtt--ctttcgtttctaatag------

upper sequence: LOC_Os07g03140.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA01G38680.1 (Glycine max), 5'ss of exon 9
GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaattggcactaacttccacag
|| | || | | ||| || ||     | || |   | ||  ||| | | || || ||||| ||||| ||||||||||||||||| || ||  ||||||||||||| |    | | | |   ||  ||   |      || |   |  |||| | |  | | | ||||   | | ||  |  ||||||     ||     |   |   | ||
GTCACTTATTTGTCGATTAGAAGAAGTAGACCCCGGCAGGTTGAAACACGAGGAGAAGATAGCTTTTTGGATCAACATACACAATGCTTTAGTGATGCATgtaatttattattttactatcaagaatatgc------ttctgtataatactttcc--cattcccatttgatta-gttgggttataat--ttgttctt-ttgtttctaatag

upper sequence: LOC_Os07g03140.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 6
GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaattggcactaacttccacag
 | | || | | ||  || ||     | ||||   | |   ||| | |||| || ||| | ||||||||||||||||||||||| || ||| |||||||||||||  |  |  |  | |||||  |         | ||     |  || | |||    | ||| ||   ||| ||   |||||  |     ||||     | |       
ATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaat--tattattactctcaaaaca--------aatttccctttattagttttccattt-ctc-ttgattgaggttataatatgctcttttttggtttctaatag-----

upper sequence: LOC_Os07g03140.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 7
GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaa-ttggcactaacttccacag
|| | || | | ||  || ||     | ||||   | |   ||| ||| || || ||| | ||||||||||||||||||||||| || ||| ||||||||||||| |    || |  |  |||  |||          |     | | | || |||  ||      ||  ||| ||   |||||  |      ||   | ||          
GTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaat-tattatcactctcaaaacaatgtttccctttcttagttttccaatgctctcact------tcattgaggttataatatgtttttgggtttctaatag---------

upper sequence: LOC_Os07g03140.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 5'ss of exon 9
GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaattggcactaacttccacag---
 | | || | | ||| || ||     | |||||||| |  |||| | |||| |||||||| || ||||||||||||||||| || |||||| |||||||||||||| |||||||   || ||| |||| |     | ||| ||       |    ||  ||   | | ||| | ||   |  ||||||| ||  |   || |||     |    
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCATTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccttcttgatt-aaactatgaa-----atttgcaagga----taccttgtttaaa-agtttctaatgtgaaatgataatgataagagcttcttactctttgaacag

upper sequence: LOC_Os07g03140.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaattggcactaacttccacag---
 | | || | | ||| || ||     | |||||||| |  |||| | |||| |||||||| || ||||||||||||||||| || |||||| |||||||||||||| ||| |||   || ||| |||| |     | ||| |        |    ||  ||   | | ||| | ||   |  ||||||| ||  |   || |||     |    
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgatt-aaactatgaa-----atttgcaggga----taccttgtttaaa-agtttctaatgtgaaatgataatgataagagcttcttactctttgaacag