1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACAACCACATGATCAATTTCTCATATTTGCATCTGATGGTCTATGGGAGCACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgcttgctcctgcacaaataaattaacatgaaacatacagatacattggttggcattttccattgcaaccatgcatgtcattggttgacatatat...
species | Oryza sativa |
transcript | LOC_Os06g50380.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|29646161|gb|CB651168.1|CB651168
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|58600142|gb|CK010670.1|CK010670
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: TCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|55409103|gb|CV721479.1|CV721479
genomic: TCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCATCCAAGAAAEST: gi|87024255|gb|CI256996.1|CI256996
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCGAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|86252535|gb|CI003871.1|CI003871
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: TTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|29664136|gb|CB660411.1|CB660411
genomic: TTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|88348231|gb|CI638890.1|CI638890
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|87023875|gb|CI288228.1|CI288228
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|88969775|gb|CI383277.1|CI383277
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|58679941|gb|CK068628.1|CK068628
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|29678232|gb|CB674507.1|CB674507
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|29677203|gb|CB673478.1|CB673478
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|66915209|gb|CX102057.1|CX102057
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAAEST: gi|86502738|gb|CI145371.1|CI145371
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
EST: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAAT GGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
genomic: ACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgctt ... gatctttcagGGAAGTGCTAGGAGGCTCATAAAGGCAGCTTTGCAAGAAGCAGCCAAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAACCACATGATCAATTTCTCATATTTGCATCTGATGGTCTATGGGAGCACTTAACCAATCAAGAGGCCGTTGACATTGTTCACAGTAGCCCTCGCAATgtaagtgcttgctcctgcacaaataaattaacatgaaacatacagatacattggttggcattttccattgcaaccatgcatgtcattggttgacatatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG