1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAAAGGATGGGAGAAGATCTGGACGGGCTGGAGTTCGACGAGCTGCGCGGTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAGgcatgcacgcacgcacgccctaattaaactacgaaccctaatttgctcaatactaaaacgtcgttcaattccttaattcaagggtggtagatccttgtat...
species | Oryza sativa |
transcript | LOC_Os06g49840.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAG TATCATGTGATCAGCACACAGACTGAAACCTACAAGAAAAAGEST: gi|29621840|gb|CB626851.1|CB626851
genomic: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAGgcatgcacgc ... atttctgcagTATCATGTGATCACCACACAGACTGAAACCTACAAGAAAAAG
EST: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAG TATCATGTGATCAGCACACAGACTGAAACCTACAAGAAAAAGEST: gi|38483278|gb|CF967080.1|CF967080
genomic: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAGgcatgcacgc ... atttctgcagTATCATGTGATCACCACACAGACTGAAACCTACAAGAAAAAG
EST: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAG TATCATGTGATCAGCACACAGACTGAAACCTACAAGAAAAAGEST: gi|58660818|gb|CK049498.1|CK049498
genomic: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAGgcatgcacgc ... atttctgcagTATCATGTGATCACCACACAGACTGAAACCTACAAGAAAAAG
EST: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAG TATCATGTGATCAGCACACAGACTGAAACCTACAAGAAAAAGEST: gi|58671677|gb|CK060363.1|CK060363
genomic: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAGgcatgcacgc ... atttctgcagTATCATGTGATCACCACACAGACTGAAACCTACAAGAAAAAG
EST: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAG TATCATGTGATCAGCACACAGACTGAAACCTACAAGAAAAAG
genomic: GTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAGgcatgcacgc ... atttctgcagTATCATGTGATCACCACACAGACTGAAACCTACAAGAAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAGGATGGGAGAAGATCTGGACGGGCTGGAGTTCGACGAGCTGCGCGGTCTTGAGCAAAATGTCGATGCCGCCCTCAAGGAGGTTCGCCACAGGAAGgcatgcacgcacgcacgccctaattaaactacgaaccctaatttgctcaatactaaaacgtcgttcaattccttaattcaagggtggtagatccttgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgccc