Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCAATCTGGAGATGAGGCATACAATGATAATGGTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaacatgtccctcattgaatttgaatgtataagtctatattgtggcctttactttaattgctatcatctttgctgctaataatatgtctgatttag

Basic information

species Oryza sativa
transcript LOC_Os06g49110.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49110.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA04G42670.1 (Glycine max), 5'ss of exon 6
TCTCAATCTGGAGATGAGGCATACAATGATAATGGTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagt-aacatgtccctcattgaatttgaatgtataagtctatattgtggcctttactttaattgctatcatctttgctgctaataatatgtctgatttag
||||   | |||||||| ||||||||||| |||||||| || || || || || ||  ||||||||||||| | ||| ||| |||||||| |||||      ||| |  | || || |   | | | |  ||        |  ||||   | || | ||||     |   ||| | |||   | ||
TCTCCCACAGGAGATGAAGCATACAATGAAAATGGTTTAGTGCCTCGAACAATACGTTTGCTCAAGGATAAGTACCCAGACCTTgtaagtgaacataatttccatagtttgtggatattatattttctggtgcataaagaaagttaagc-caataacctttctcatt--caatctttct---tcag

upper sequence: LOC_Os06g49110.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA06G12110.1 (Glycine max), 5'ss of exon 5
TCTCAATCTGGAGATGAGGCATACAATGATAATGGTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagt-aacatgtccctcattgaatttgaatgtataagtctatattgtggcctttactttaattgctatcatctttgctgctaataatatgtctgatttag
||||   | |||||||| ||||||| ||| |||||||| || || ||||| || ||  ||||||||||||| | ||| ||| |||||||| ||||||     ||| |   ||||   ||| |   ||| || |||    ||    || |     ||       | || ||   || | |  || ||
TCTCCCACAGGAGATGAAGCATACAGTGAAAATGGTTTAGTGCCTCGGACAATACGTTTGCTCAAGGATAAGTACCCAGACCTTgtaagtgaacatgatttccatag---ttgaggatatta---tattttctggtgcatatagaaagttaagccaataacctttctcattcaatctttc-ttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681115|gb|CB677390.1|CB677390
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29616370|gb|CB621382.1|CB621382
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29619108|gb|CB624120.1|CB624120
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29666981|gb|CB663256.1|CB663256
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29660427|gb|CB656702.1|CB656702
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29617546|gb|CB622558.1|CB622558
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29621569|gb|CB626580.1|CB626580
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29673911|gb|CB670186.1|CB670186
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29641824|gb|CB646831.1|CB646831
EST:     TTTGGTTCCACGGACTATTCGCCTGCTNCA-GGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: TTTGGTTCCACGGACTATTCGCCTGCT-CAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29687455|gb|CB683730.1|CB683730
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29672090|gb|CB668365.1|CB668365
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29661434|gb|CB657709.1|CB657709
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29641133|gb|CB646140.1|CB646140
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGACTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29679002|gb|CB675277.1|CB675277
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29619411|gb|CB624423.1|CB624423
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29667711|gb|CB663986.1|CB663986
EST:     TTTGGTTCCACGGACTATTCGCCTGCTNCA-GGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: TTTGGTTCCACGGACTATTCGCCTGCT-CAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29615586|gb|CB620598.1|CB620598
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29637162|gb|CB642171.1|CB642171
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29624060|gb|CB629071.1|CB629071
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29682583|gb|CB678858.1|CB678858
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29619315|gb|CB624327.1|CB624327
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|9788971|gb|BE530981.1|BE530981
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29643724|gb|CB648731.1|CB648731
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29655802|gb|CB652077.1|CB652077
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29637541|gb|CB642550.1|CB642550
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29681299|gb|CB677574.1|CB677574
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29688148|gb|CB684423.1|CB684423
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
EST: gi|29660273|gb|CB656548.1|CB656548
EST:     GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATT                         GTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT
genomic: GTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagtaaca ... tctgatttagGTTGTCTACACGGATGTTGCTCTGGACCCTTATTCATCTGATGGTCATGAT