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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCACAGGTTCATCGTGCAACTCTTGTAGATGGCAGAGAAGTAGTTGTGAAAATCCAACATGATGGTATCAAAGATATCATATTAGAGgtttgcctctattctgaaaaaacggacttatgtaaaatgtgcaggattgctatatcattttcttaatgttgtcag

Basic information

species Oryza sativa
transcript LOC_Os06g48770.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g48770.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G140917_T01 (Zea mays), 5'ss of exon 6
ATAGCACAGGTTCATCGTGCAACTCTTGTAGATGGCAGAGAAGTAGTTGTGAAAATCCAACATGATGGTATCAAAGATATCATATTAGAGgtttgcctctattctgaaaaaacggacttatgtaaaatgtgcaggattgctatatcattttcttaatgttg-tcag
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ATAGCACAAGTTCATCGTGCAACTCTGGCAGATGGCAGAGAAGTAGTTGTCAAAATTCAGCATGATGGTGTGAAGGAGATCATATTAGAGgtttatctctaacctgcaagtatg---ctgtctagcacagttggagt--ccattacatttttctattggtggccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88977704|gb|CI384186.1|CI384186
EST:     AAGTAGTTGTGAAAATCCAACATGATGGTATCAAAGATATCATATTAGAG                         GATTTGAAGAATGCAAAATCATTAGTTGAATGGATTGCATGGGCAGAGCCT
genomic: AAGTAGTTGTGAAAATCCAACATGATGGTATCAAAGATATCATATTAGAGgtttgcctct ... atgttgtcagGATTTGAAGAATGCAAAATCATTAGTTGAATGGATTGCATGGGCAGAGCCT