1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATAGCCGTGTACAAAGTCCTTTACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCAGCCATTGATCAGgtataacatatgagttacttatctgaatttctttccactgtaatgcaggtgctgccatgttagtacttagtacctgacaatagtgactcaaaacaattat...
species | Oryza sativa |
transcript | LOC_Os06g48650.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCAGCCATTGATCAG GCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGCEST: gi|163922990|gb|EG712763.1|EG712763
genomic: ACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCAGCCATTGATCAGgtataacata ... cattttgcagGCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGC
EST: ACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCACCCATTGATCAG GCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGCEST: gi|58681743|gb|CK070430.1|CK070430
genomic: ACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCAGCCATTGATCAGgtataacata ... cattttgcagGCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGC
EST: ACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCAGCCATTGATCAG GCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGCEST: gi|58684518|gb|CK073205.1|CK073205
genomic: ACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCAGCCATTGATCAGgtataacata ... cattttgcagGCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGC
EST: ATCTGATGTTGTTGCAGCCATTGATCAG GCTGTGCAGGATGGTGTTGACATTCTCAAGCTTTCTGTTGGCCCAAATAGC
genomic: ATCTGATGTTGTTGCAGCCATTGATCAGgtataacata ... cattttgcagGCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGCCGTGTACAAAGTCCTTTACAGGCTTTTTGGTGGTTATGTATCTGATGTTGTTGCAGCCATTGATCAGgtataacatatgagttacttatctgaatttctttccactgtaatgcaggtgctgccatgttagtacttagtacctgacaatagtgactcaaaacaattat
- - - - - - - - - - - - - - - - TGGTGG