1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAATTCTGGGCTATCTTCTATACGCCGCGAAAATAGTGGCTGAGAAGGAAGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactcccatgccacatctcttttctacttactggggtttgcacatgttttcacttttcagtatacatgctacacatcatccttcaacgtattttcggtgttgatacccatgctcatgcatgagctcttttccaccgccatatttttcagtatttatgctaatactgtatcatcgctctgtccacag
species | Oryza sativa |
transcript | LOC_Os06g45660.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88516318|gb|CI443972.1|CI443972
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|218505045|gb|FG968801.1|FG968801
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTACGTGGAAGGCAGATGAEST: gi|88511661|gb|CI439167.1|CI439167
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88481560|gb|CI418831.1|CI418831
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|38477525|gb|CF961658.1|CF961658
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|33815382|gb|CF333545.1|CF333545
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|58596640|gb|CK007168.1|CK007168
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88365619|gb|CI543100.1|CI543100
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: GTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|33689071|gb|CF317310.1|CF317310
genomic: GTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88475497|gb|CI412768.1|CI412768
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88472944|gb|CI410215.1|CI410215
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|38475488|gb|CF959621.1|CF959621
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|33689070|gb|CF317309.1|CF317309
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTEST: gi|88283761|gb|CI405207.1|CI405207
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACT
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88513073|gb|CI440579.1|CI440579
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|25797786|gb|CA753747.1|CA753747
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAAGTGGAAGGCAGATGAEST: gi|38481086|gb|CF965175.1|CF965175
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTEST: gi|163925430|gb|EG713343.1|EG713343
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACT
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|5004087|gb|AU069236.1|AU069236
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|33657720|gb|CF280334.1|CF280334
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTEST: gi|33689232|gb|CF317471.1|CF317471
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACT
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88284646|gb|CI406092.1|CI406092
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|2317371|gb|C22425.1|C22425
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88491278|gb|CI428550.1|CI428550
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: GGGTACCGTGTCGTCATAAACAATGGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCAGTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|33823879|gb|CF337751.1|CF337751
genomic: GGGTACCGTGTCGTCATAAACAAT-GGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: GGTATAGCTGAAGGGTACCCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTEST: gi|33656833|gb|CF279447.1|CF279447
genomic: GGTATAGCTGAAGGGTACC-GTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACT
EST: GGTATAGCTGAAGGGTACCCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTEST: gi|88502502|gb|CI430008.1|CI430008
genomic: GGTATAGCTGAAGGGTACC-GTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACT
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88554210|gb|CI484376.1|CI484376
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGGGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88478200|gb|CI415471.1|CI415471
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88281821|gb|CI403217.1|CI403217
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88238598|gb|CI238447.1|CI238447
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|88992474|gb|CI035594.1|CI035594
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|11442620|gb|BF430523.1|BF430523
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|33815380|gb|CF333544.1|CF333544
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: GGTATAGCTGAAGGGTACCCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACEST: gi|33659581|gb|CF282194.1|CF282194
genomic: GGTATAGCTGAAGGGTACC-GTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTAC
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAAGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACEST: gi|112785873|gb|EE591589.1|EE591589
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTAC
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAEST: gi|87004366|gb|CI298898.1|CI298898
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
EST: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGAT GTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
genomic: AGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactc ... ctgtccacagGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTCTGGGCTATCTTCTATACGCCGCGAAAATAGTGGCTGAGAAGGAAGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAAAGGATgtaagcactcccatgccacatctcttttctacttactggggtttgcacatgttttcacttttcagtatacatgctacacatcatccttcaacgtattttcggtgttgatacccatgctcatgcatgagctcttttccaccgccatatttttcagtatttatgctaatactgtatcatcgctctgtccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG