1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATAGACGAAATTGCGGGTGAAGTGCCGGTTGCATTCATTGTACGGATTGAAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgcttagtttatcaatctctccatctaccgctttatggttcacatacaagtaatcactagtctatagaagccatcatatattcatttatgcttaga...
species | Oryza sativa |
transcript | LOC_Os06g44620.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAG GTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCGEST: gi|29664259|gb|CB660534.1|CB660534
genomic: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgctta ... aacatcacagGTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
EST: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAG GTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCGEST: gi|29664258|gb|CB660533.1|CB660533
genomic: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgctta ... aacatcacagGTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
EST: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAG GTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCGEST: gi|58666259|gb|CK054945.1|CK054945
genomic: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgctta ... aacatcacagGTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
EST: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAG GTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCGEST: gi|89161555|gb|CI099527.1|CI099527
genomic: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgctta ... aacatcacagGTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
EST: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAG GTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCGEST: gi|38482262|gb|CF966310.1|CF966310
genomic: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgctta ... aacatcacagGTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
EST: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAG GTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCGEST: gi|29676730|gb|CB673005.1|CB673005
genomic: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgctta ... aacatcacagGTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
EST: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAG GTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCGEST: gi|29623324|gb|CB628335.1|CB628335
genomic: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgctta ... aacatcacagGTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
EST: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAG GTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCGEST: gi|29673469|gb|CB669744.1|CB669744
genomic: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgctta ... aacatcacagGTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
EST: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAG GTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
genomic: AAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgctta ... aacatcacagGTTGTTTTCTACAAGAGGCTCAACAAAGTTTTCTTCGCGGATTCAATTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGACGAAATTGCGGGTGAAGTGCCGGTTGCATTCATTGTACGGATTGAAGGATCTGCAATCAGCGAGAATGAGATCAAGCAATTTGTGGCAAAGGAGgtaatgcttagtttatcaatctctccatctaccgctttatggttcacatacaagtaatcactagtctatagaagccatcatatattcatttatgcttaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG