Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagaagcaatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g43860.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g43860.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G055243_T01 (Zea mays), 5'ss of exon 5
TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtcgtggacttctaacagaaattccttttacatatttttgg----tttccattttcctgtctctgtctgtttatgcctagaaaaagaagcaatgcag
| ||||| || ||||||||||| |||||||||||||| ||||| ||||||||||||| |||| | || |||||||| || |||||||||||||||||||||||   |  |  | |  |   ||  |  |||   || || ||  |||     ||||   ||||   |  |||| || |||||| |  || ||            
TACAACTGAAGCAGATCAATAACTGGTTTATCAACCAGCGTAAGCGGAACTGGCACAACAATTCGGCGTCATCCTCGTCGGACAAAAGCAAGAGAAAAAGgtaatatcacaagaaacta-gactaagcttctgcttccacatccttgacacctttctggtttctgtttgctgtatgcttatgcttgtaataaag----------

upper sequence: LOC_Os06g43860.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA06G06890.2 (Glycine max), 5'ss of exon 5
TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagaagcaatgcag
||||  |||| ||||||||||||||||||||||| ||| | ||  |||||||||| |||| |||  |  | ||  |       || |||||| | |||||||||    || |       ||| |||  | | ||||||  |||| |  ||| |||   |   | |    |  | |  |  ||  |||||||| |||||||
TGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAGTCCCTCAACTTCTACTGTTTTGAAGAGCAAGCGCAAAAGgtat----tcata-----ttaaaagatgtgc-ttttactaatttatattttgcatgagc---tttgcaccaatcttagttta--aaaagaagtaatgcag

upper sequence: LOC_Os06g43860.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 5
TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCT---GCTTCATCCTCATCAGA---CAAAAGCAAGAG------------AAAAAGgtatcgtgt-----------cgtggacttctaacagaaattcctt-----------ttacatatttttggtttccat-tttcctgtctctgtctgtttatgcctag---aaaaagaagcaatgcag
||||| |||| ||||| ||||||||||||||||| ||| | ||  |||| |||||||||||||||    ||||| |    |   |   |||| |||| ||            |||   |||   |||            || |   |||| || || ||  ||           ||||   | |||| ||   |  |||  |||     |      || | ||     ||||||||||||||||
TGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAACGCAAAAGgtattcccatcaaaactagtaatttgtacaacaaaaaatgtaggtatctatcacaatttttttcgttgtaccacttaccattgtttgattattacattttttgtgaacattgcaccattcttaatttgaaaagaagcaatgcag

upper sequence: LOC_Os06g43860.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA06G06890.1 (Glycine max), 5'ss of exon 5
TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagaagcaatgcag
||||  |||| ||||||||||||||||||||||| ||| | ||  |||||||||| |||| |||  |  | ||  |       || |||||| | |||||||||    || |       ||| |||  | | ||||||  |||| |  ||| |||   |   | |    |  | |  |  || ||| |            
TGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAGTCCCTCAACTTCTACTGTTTTGAAGAGCAAGCGCAAAAGgtat----tcata-----ttaaaagatgtgc-ttttactaatttatattttgcatgagc---tttgcaccaatcttagtttaaaaagaag----------

upper sequence: LOC_Os06g43860.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA17G32980.1 (Glycine max), 5'ss of exon 5
TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtcgtggacttctaacaga---aattccttttacatatttttggtttccattttcctgtctctgtctgtttat-gcctagaaaaagaagcaatgcag------------------------------------------
||||| |||| ||||| ||||| ||||||||||| ||| | ||  |||| ||||||||||||||| |  | ||  |  |    || |||||| | |||||||||          |||  |||  |    ||  |    |  |    | |    |  |  |  |    | ||||| | ||   | ||| |  |   |      |                                           
TGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcccatcaaaactagtaattggtacaacacaaaatgtaggaatctataatagaaatcacacattttgtctttgtaccacttagcattatttgattcttatattttttttgtgaacattggaccaatcttaatttgaaaaaag

upper sequence: LOC_Os06g43860.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA17G32980.2 (Glycine max), 5'ss of exon 5
TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtat-cgtgtcgt------------------------------ggacttctaacagaaat-----------tccttttac------atatt-tttggtttccat---tttcctgt-----ctctgtctgtttatgcctagaaaaagaagcaatgcag
||||| |||| ||||| ||||| ||||||||||| ||| | ||  |||| ||||||||||||||| |  | ||  |  |    || |||||| | ||||||||| |   ||                                | |  | ||| ||||||           || || |||        ||| |||| ||   ||   |||  |||      |    |  | |     |  |||||||||||||||||
TGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcccatcaaaactagtaattggtacaacacaaaatgtaggaatctataatagaaatcacacattttgtctttgtaccacttagcattatttgattcttatattttttttgtgaacattggaccaatcttaatttgaaaaaagaagcaatgcag

upper sequence: LOC_Os06g43860.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA04G06810.1 (Glycine max), 5'ss of exon 6
TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagaagcaatgcag
|||| ||||| ||||||||||||||||||||||| ||| | ||  |||||||||| ||||| ||  |  | ||  |  |    || |||||| | |||||||||    || |       ||| |||    | ||| | | ||||    ||| |||   | |  | |         |  | ||    |||||| |||||||
TGCAGCTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAACCCCTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtat----tcata-----ttaaaagatgcccttttaata-atttaaaatttgcatgagctttgcacc--------aatcttaatttaagaagtaatgcag

upper sequence: LOC_Os06g43860.3 (Oryza sativa), 5'ss of exon 5
lower sequence: PP1S154_83V6.1 (Physcomitrella patens), 5'ss of exon 9
TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGAC---AAAAGCAAGAGAAAAAGgt----atcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccatttt--cctgtctctgtctgtttatgcctagaaaaagaagcaatgcag
   || | || ||  | ||||||||||| || |||||||| || ||||||||||||||||||||    ||||| || || ||    || |||||  | |||| ||    |    ||  | |  || |       |    ||  |   |   |   ||  | | |   |||    ||    |||| | | |  |        |       
---AATTGAAGCAAGTGAATAATTGGTTCATAAACCAACGCAAGCGGAACTGGCACAGCAATCCATTGTCATCATCTTCTGAGCTGAAGAGCAAACGGAAAAAgtgagtacaccgtaattgcattttctggttgagcatttccaagaaccgtctattaacgtgtcaacctcaaactccaggttttttcttttattcgttctcg------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58695270|gb|CK083957.1|CK083957
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29636438|gb|CB641447.1|CB641447
EST:     TGGCACAGCAATCCTGGTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29659496|gb|CB655771.1|CB655771
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29667364|gb|CB663639.1|CB663639
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29657257|gb|CB653532.1|CB653532
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29640636|gb|CB645645.1|CB645645
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|58692037|gb|CK080724.1|CK080724
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|30226666|gb|CB964558.1|CB964558
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|58693265|gb|CK081952.1|CK081952
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|58695467|gb|CK084154.1|CK084154
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29645298|gb|CB650305.1|CB650305
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29615078|gb|CB620091.1|CB620091
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29678380|gb|CB674655.1|CB674655
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29667393|gb|CB663668.1|CB663668
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29660832|gb|CB657107.1|CB657107
EST:     TGGCACAGCAATCCTGGTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATTTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|86900371|gb|CI296414.1|CI296414
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29667392|gb|CB663667.1|CB663667
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29645255|gb|CB650262.1|CB650262
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29645297|gb|CB650304.1|CB650304
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29657258|gb|CB653533.1|CB653533
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|14571398|gb|BI118766.1|BI118766
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGGAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29645222|gb|CB650229.1|CB650229
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|89198793|gb|CI003530.1|CI003530
EST:     AAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: AAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|38483171|gb|CF966973.1|CF966973
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29659495|gb|CB655770.1|CB655770
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29618507|gb|CB623519.1|CB623519
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29679811|gb|CB676086.1|CB676086
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29686228|gb|CB682503.1|CB682503
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|14571386|gb|BI118754.1|BI118754
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|89170914|gb|CI040191.1|CI040191
EST:     TGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29637144|gb|CB642153.1|CB642153
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTTGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29640635|gb|CB645644.1|CB645644
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29663219|gb|CB659494.1|CB659494
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29667365|gb|CB663640.1|CB663640
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29640783|gb|CB645790.1|CB645790
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|30229571|gb|CB967462.1|CB967462
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|58689485|gb|CK078172.1|CK078172
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTAT
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: gi|29669194|gb|CB665469.1|CB665469
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         A
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcag-
EST: gi|29669194|gb|CB665469.1|CB665469
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         A
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcag-
EST: gi|29669194|gb|CB665469.1|CB665469
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG                         A
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcag-
EST: gi|29657867|gb|CB654142.1|CB654142
EST:     TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGAAGCAATGCAG               
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AGAA--AA---AGgtatcgtgtc ...

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 46 (downstream exon)
Score: 20

TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATATATATGTAAATAATGCATCCATTGTGAAGAATGCCAGTATATTTATTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagaagcaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA