1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTTCTTATGGCGACAAATAGGATGGATATTTTGGATCAAGCTCTCCTGAGGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGATgtaagtggcaatcacttcttttttttttctgcaagcagcagagttcatgctacttcatctcgtcatcagttctttagttacttaatcgcatctttttctcctgcag
species | Oryza sativa |
transcript | LOC_Os06g39870.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCCAAATCCGAATGAAGAT TCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTEST: gi|86498324|gb|CI140957.1|CI140957
genomic: TTCCAAATCCGAATGAAGATgtaagtggca ... tctcctgcagTCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGAT TCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTEST: gi|29655701|gb|CB651976.1|CB651976
genomic: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGATgtaagtggca ... tctcctgcagTCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGAT TCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTEST: gi|86425523|gb|CI070620.1|CI070620
genomic: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGATgtaagtggca ... tctcctgcagTCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGAT TTCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTEST: gi|13420354|gb|AU174444.1|AU174444
genomic: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGATgtaagtggca ... tctcctgcagTCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGAT TCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTEST: gi|25803586|gb|CA759547.1|CA759547
genomic: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGATgtaagtggca ... tctcctgcagTCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGAT TCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACCTGATGCGTEST: gi|86427557|gb|CI072654.1|CI072654
genomic: GGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGATgtaagtggca ... tctcctgcagTCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: TGAATTTCCAAATCCGAATGAAGAT TCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: TGAATTTCCAAATCCGAATGAAGATgtaagtggca ... tctcctgcagTCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCTTATGGCGACAAATAGGATGGATATTTTGGATCAAGCTCTCCTGAGGCCTGGTCGCATTGATAGGAAGATTGAATTTCCAAATCCGAATGAAGATgtaagtggcaatcacttcttttttttttctgcaagcagcagagttcatgctacttcatctcgtcatcagttctttagttacttaatcgcatctttttctcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA