Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTCCAAATGGTGGATGTTCAGACAAGTCCAGTTTCTTGAACAGTGACATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGTGGTAgttgtacttaacctctatatatcttaatcaacagaagatgacttgatgtcttgatcagctctagcacatctagctggcatatgataacttgcacggcaacctatgatcaagtccaaaattgactgcatttcttatcatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g36770.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2310581|gb|C26736.1|C26736
EST:     ACATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGTGGTA                         GTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCA
genomic: ACATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGTGGTAgttgtactta ... tatcatgcagGTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCA
EST: gi|58660482|gb|CK049162.1|CK049162
EST:     ATATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGT-G--                         GTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCA
genomic: ACATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGTGGTAgttgtactta ... tatcatgcagGTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCA
EST: gi|66912957|gb|CX099805.1|CX099805
EST:     ATATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGTGGTA                         GTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCA
genomic: ACATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGTGGTAgttgtactta ... tatcatgcagGTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCA
EST: gi|33796287|gb|CF324010.1|CF324010
EST:     ACATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGTGGTA                         GTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCA
genomic: ACATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGTGGTAgttgtactta ... tatcatgcagGTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCTTCCAAATGGTGGATGTTCAGACAAGTCCAGTTTCTTGAACAGTGACATTTTGTTTCCACCTGGAGGCTACCCGTCATTACGTTTGCCTGTGGTAgttgtacttaacctctatatatcttaatcaacagaagatgacttgatgtcttgatcagctctagcacatctagctggcatatgataacttgcacggcaacctatgatcaagtccaaaattgactgcatttcttatcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG