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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCGAATGTTATTCTGAGAATCCCATTTTCCATCATCGAATCTATAGTCTGGGTGATTGTTACATACTACACTATAGGATTTGCCCCAGAGGCTGACAGgtacacaaaaagcagaaaaagaattaaacatgaattcaggaaagcaaggtttctgtccacttacctatcatctttctgcacag

Basic information

species Oryza sativa
transcript LOC_Os06g36090.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 9
TACCGAATGTTATTCTGAGAATCCCATTTTCCATCATCGAATCTATAGTCTGGGTGATTGTTACATACTACACTATAGGATTTGCCCCAGAGGCTGACAGgtacacaaaaagcagaaaaagaattaaacatgaattcaggaaagcaaggtttctgtccacttacc-tatcatctttctgcacag
||||||| || ||||| ||||||||||| ||||| || ||||||||||| |||||  |||| ||||| ||||| ||||| ||||| ||||| ||||||||||| |  ||              ||  | |  | ||| ||||    |  | | |     || |   ||| || | | ||  |||
TACCGAACGTCATTCTCAGAATCCCATTCTCCATTATTGAATCTATAGTATGGGTTCTTGTGACATATTACACCATAGGGTTTGCTCCAGATGCTGACAGgtaaatgaaggagtagtccttttttctaaaacatttctggaatcagaattctgtaatggctaattgtattatgtatatgggcag

upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G366146_T01 (Zea mays), 5'ss of exon 5
TACCGAATGTTATTCTGAGAATCCCATTTTCCATCATCGAATCTATAGTCTGGGTGATTGTTACATACTACACTATAGGATTTGCCCCAGAGGCTGACAGgtacacaaa-aagcagaaaaagaattaaacatga--attcaggaaagcaaggtttctgtccacttacc-tatcatctttctgcacag
||||||| || ||||| || |||||||| ||||| || |||||||||||||||||  |||| ||||| || || ||||| ||| | ||||||||||||||||| |  ||  ||  |        || |   |    |||  || |    |  | | |  |  || |   | | || | | ||  |||
TACCGAACGTCATTCTTAGGATCCCATTCTCCATTATTGAATCTATAGTCTGGGTTCTTGTCACATATTATACCATAGGGTTTTCTCCAGAGGCTGACAGgtaaatgaatgagttgtcttttcttttattttttccatttcgggatcataattctataactgctaattatgttatatctatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643488|gb|CB648495.1|CB648495
EST:     TGGGTGATTGTTACATACTACACTATAGGATTTGCCCCAGAGGCTGACAG                         ATTTTTCAAGCAGTTGCTGCTAGTGTTCTTGATCCAGCAGATGGCAGGTGG
genomic: TGGGTGATTGTTACATACTACACTATAGGATTTGCCCCAGAGGCTGACAGgtacacaaaa ... ttctgcacagATTTTTCAAGCAGTTGCTGCTAGTGTTCTTGATCCAGCAGATGGCAGGTGG
EST: gi|29673478|gb|CB669753.1|CB669753
EST:     TGGGTGATTGTTACATACTACACTATAGGATTTGCCCCAGAGGCTGACAG                         ATTTTTCAAGCAGTTGCTGCTAGTGTTCTTGATCCAGCAGATGGCAGGTGG
genomic: TGGGTGATTGTTACATACTACACTATAGGATTTGCCCCAGAGGCTGACAGgtacacaaaa ... ttctgcacagATTTTTCAAGCAGTTGCTGCTAGTGTTCTTGATCCAGCAGATGGCAGGTGG