1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCATGTGTACTTTACTAGATACTGCTCCACATTTCAACTTCCGTGAAAGTATACTTGCCAGCGTGGCAAGAAATTTAAGTTCTCCAGATGATGCAGTGAGgttgactacgtaacctgtattaatttatatcaaaatcattgtttcctgttagatgttgatttagctgtgcaactgatttccttgaataatgtcttgtgta...
species | Oryza sativa |
transcript | LOC_Os06g30320.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATACTTGCCAGCGTGGCAAGAAATTTAAGTTCTCCAGATGATGCAGTGAG GAAAATGTGTTGTGAAACGATAAGGTCTCTATTTGTAGATGAAGGAAAGCAEST: gi|58693812|gb|CK082499.1|CK082499
genomic: ATACTTGCCAGCGTGGCAAGAAATTTAAGTTCTCCAGATGATGCAGTGAGgttgactacg ... ttctttgtagGAAAATGTGTTGTGAAACGATAAGGTCTCTATTTGTAGATGAAGGAAAGCA
EST: ATACTTGCCAGCGTGGCAAGAAATTTAAGTTCTCCAGATGATGCAGTGAG GAAAATGTGTTGTGAAACGATAAGGTCTCTATTTGTAGATGAAGGAAAGCAEST: gi|86891995|gb|CI310124.1|CI310124
genomic: ATACTTGCCAGCGTGGCAAGAAATTTAAGTTCTCCAGATGATGCAGTGAGgttgactacg ... ttctttgtagGAAAATGTGTTGTGAAACGATAAGGTCTCTATTTGTAGATGAAGGAAAGCA
EST: ATACTTGCCAGCGTGGCAAGAAATTTAAGTTCTCCAGATGATGCAGTGAG GAAAATGTGTTGTGAAACGATAAGGTCTCTATTTGTAGATAAAGGAAAGCA
genomic: ATACTTGCCAGCGTGGCAAGAAATTTAAGTTCTCCAGATGATGCAGTGAGgttgactacg ... ttctttgtagGAAAATGTGTTGTGAAACGATAAGGTCTCTATTTGTAGATGAAGGAAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGTGTACTTTACTAGATACTGCTCCACATTTCAACTTCCGTGAAAGTATACTTGCCAGCGTGGCAAGAAATTTAAGTTCTCCAGATGATGCAGTGAGgttgactacgtaacctgtattaatttatatcaaaatcattgtttcctgttagatgttgatttagctgtgcaactgatttccttgaataatgtcttgtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG