1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttccattgtctcatgttaaaacgtccagttttctctccatcctttactttgctaaacttgtgcttcacttgcag
species | Oryza sativa |
transcript | LOC_Os06g15690.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATT GAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCEST: gi|88850278|gb|CI091771.1|CI091771
genomic: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttcc ... tcacttgcagGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATC
EST: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATT GAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCEST: gi|88380663|gb|CI521232.1|CI521232
genomic: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttcc ... tcacttgcagGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATC
EST: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATT GAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCEST: gi|86489343|gb|CI131976.1|CI131976
genomic: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttcc ... tcacttgcagGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATC
EST: TGAAAATGCGTCTGAATTTCGACTGAGCCAAATT GAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCEST: gi|58602517|gb|CK013045.1|CK013045
genomic: TGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttcc ... tcacttgcagGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATC
EST: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATT GAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCEST: gi|29626097|gb|CB631108.1|CB631108
genomic: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttcc ... tcacttgcagGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATC
EST: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATT GAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCEST: gi|86415423|gb|CI069826.1|CI069826
genomic: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttcc ... tcacttgcagGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATC
EST: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATT GAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCEST: gi|88437816|gb|CI533773.1|CI533773
genomic: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttcc ... tcacttgcagGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATC
EST: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATT GAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATC
genomic: GCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttcc ... tcacttgcagGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTgtacgtttccattgtctcatgttaaaacgtccagttttctctccatcctttactttgctaaacttgtgcttcacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT