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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCTTGCCCCCAAACTATATCACATGGAGATAGCTCTAGGTCACTATAAGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAGgtatactgtttatctatttatttattggtgcaatcagttttctgaaaatatgattagttggttttttaaggcacttagctggaagtatgatccatagttc...

Basic information

species Oryza sativa
transcript LOC_Os06g12630.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g12630.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G826194_T02 (Zea mays), 5'ss of exon 5
CTCTCTTGCCCCCAAACTATATCACATGGAGATAGCTCTAGGTCACTATAAGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAGgtatactgtttat---ctatttatttattggtgcaatcagttttctgaaaatatgattagttggttttttaaggcacttagctgga-agtatgatccatagttc---
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CTCTCTGGGTCCTAAACTATATCACATGGAGATAACTCTGGGCCACTACAAGAATTGGTCTGTTCCAGATTCACTTTCTTATGTAAAAACATATATGAAGgtatg-tatccatgtcctacacaatgatctttgagcttatctttttgg-----taattagttt-ttattggaggaagaaggttccatagtattgcacataatgtttg