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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTGAAGTTGGGAGATTTGAAGGGTGCTCTGTTGGATGCTGATTTTGCACTGCGTGAAAGTGAGGGCAATGCTAAGGCATTTTTTCGACAAGGACAGgttggtattgacctgcagtaatggtttcactatttgctgatgctttttttctctgaactatgatttatttgtctgcgtgcttgtgagctttgttaatcga...

Basic information

species Oryza sativa
transcript LOC_Os06g11320.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g11320.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G329306_T01 (Zea mays), 5'ss of exon 5
CAAATTGAAGTTGGGAGATTTGAAGGGTGCTCTGTTGGATGCTGATTTTGCACTGCGTGAAAGTGAGGGCAATGCTAAGGCATTTTTTCGACAAGGACAGgttggta--ttgacctgcagtaatggtttcactatttgctg-atgcttttttt----ctctgaactatgatttatttgtctgcgtgcttgtgagctttgttaatcga
|||||| ||||| |||||||  |  || ||| | || || || |||||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||||| |  ||       |  | | ||||  || ||  ||  |||||     |     |||    || | |  |      |||||  || |||   || |       
CAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATTTTGCACTGCGTGAAAGGGAGGGAAATGCTAAAGCTTTTTTCCGACAAGGACAGgttggcaacttttgtcatataatttgttttgctgttgactacatgctgccggtgacattctagcttaagttcaaaacacttgcgt-tttatgattgttctc------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86496111|gb|CI138744.1|CI138744
EST:     CACTGCGTGAAAGTGAGGGCAATGCTAAGGCATTTTTTCGACAAGGACAG                         GCACACATTGCACTCAATGACATTGATGCGGCAGTGGAGAGCTTCAAGCAT
genomic: CACTGCGTGAAAGTGAGGGCAATGCTAAGGCATTTTTTCGACAAGGACAGgttggtattg ... ccatttgcagGCACACATTGCACTCAATGACATTGATGCGGCAGTGGAGAGCTTCAAGCAT