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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAGgttctatttgcatttctcattgacagtgtttcactttctttctcttcaattttatacctcaacagttgaattttgtgtatgaaaatgttcag

Basic information

species Oryza sativa
transcript LOC_Os06g09370.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58608306|gb|CK036339.1|CK036339
EST:     GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAG                         ATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT
genomic: GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAGgttctatttg ... aaatgttcagATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT
EST: gi|58591002|gb|CF989310.1|CF989310
EST:     GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAG                         ATACCACCATTGATCCATGACCATA
genomic: GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAGgttctatttg ... aaatgttcagATACCACCATTGATCCATGACCATA
EST: gi|218483231|gb|FG956163.1|FG956163
EST:     GTA-TCA-TTGGCAGTTACTGATGCACAAGGGCCA-CACTTCCTTCAAAG                         ATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT
genomic: GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAGgttctatttg ... aaatgttcagATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT
EST: gi|58602916|gb|CK013444.1|CK013444
EST:     GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAG                         ATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT
genomic: GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAGgttctatttg ... aaatgttcagATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT
EST: gi|218482847|gb|FG953463.1|FG953463
EST:     GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAG                         ATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT
genomic: GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAGgttctatttg ... aaatgttcagATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT
EST: gi|58603374|gb|CK013902.1|CK013902
EST:     GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAG                         ATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT
genomic: GTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAGgttctatttg ... aaatgttcagATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCT