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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGgtaactcctttgtttacttattaagcagttatccatgtctgcaagagtaatgtttctatgcttatagtcaaccaatatatgactatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g08400.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
TGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGgtaactcctttgtttacttattaagcagttatccatgtctgcaagagtaatgtttctatgcttatagtcaaccaatatatgactatgcag
 ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| |||||||||||||||||||||  ||||||||||| || ||||||| ||  |   || |       |    | |||||   ||                       
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgtttactt-tttagcagtt-tctttcaatgtactgaccttaaagccatgct-gcag-----------------------

upper sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 5
TGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGgtaactcctttgt-ttacttattaagcagttatccatgtctgcaagagtaat--gtttctatgcttatagtcaaccaatatatgactatgcag-----------------------------------------------------------------------
 |||||||| |||||  | ||  | ||||||||||||| |  ||||||||||||||||||| | || |||||||| || |  |||||   ||| |||||||| |     |||| ||  ||  ||     ||    |            |||   ||||  |   |  |    ||   ||| ||||  ||                                                                           
CGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttggttgctacatgcttcatgaaactcaattttataacacgtttaaacattcttctggaatttatagatgaagatctttaactttctttaccttaattttttgaggtcaatacgaatgaaaataatgcttaaatccttattcatttacag

upper sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv18s0001g11820.t01 (Vitis vinifera), 5'ss of exon 5
TGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGgt-----aactcctttgtttacttattaagcagttatccatgtctgcaa--gagtaatgtttcta--tgcttatagtcaaccaatatatgactatgcag-
||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||||||  | || || | |||     | ||||| | ||| ||||||||     ||      | | || |   |    |   |  |  ||    |   || |  ||| |  |  ||||  ||  | ||  | | |     ||  || 
TGAGATTGGTCATGGACGTTTTCTAAGTTGCATGGGTGCAGTTTGGCATCCAGAATGTTTCAGATGCCACGGTTGCGGCTACCCAATTTCTGATTATGAGgtgaaataataatactctatattggctgctgaagcactctagttcttagctgattcttgtctgcagttgctattatgctacttaaacagattgatataga

upper sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 9
TGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGgt--aactcctttgtttacttatta-agcagttatcc-atgtctgcaagagtaatgttt-----ctatgcttatagtcaaccaatat--atgactatgcag--------------------------------------------
||| ||||||||||   |     | ||  ||||||| |||||||||||||||||||||||||| ||||||||||||  ||  |  || | |||   ||||||  || |||  |    | |||||  ||   |  ||  |  |  || |  | |||| ||     ||| ||| ||  ||||| ||| |   ||  | |   |                                            
TGAAATTGGTCATGAAAGACATTTGAGGCGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGTCATGCTTGTGGTCTTCGCATTTTTGATCTTGAGgtccaaatccagttcagatttattctagttttggtctgacattggctaatgaaatgcttggatactaagctgattttcaactaattttggtggttctatggaatgcacttgcttattttcatttttttccccctttgtttggtag

upper sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 6
TGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGgt--aactcctttgtttacttatta-agcagttatcca-tgtctgcaagagtaatgtttctat-----gcttatagtcaaccaatat--atgactatgcag----------------------------------------
 ||||||||||||||  | |   | ||||||||||| |||||||||||||||||||||||||| || | |||||||   |  || || | |||  |||||||  || |||  |    | |||||  ||   |  ||     |  || |  | |||| ||  ||     ||| ||  || |  ||| |   ||  | |   |                                        
CGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGgtccaaatccagttcagatttattctagttttggtctggcattggctaatgaaatgcttggatccaaagctgattttccagtaattttggtggttctatggaatgcacttgctaattttcattttttcctttctttgatag