1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCGTTCTGCTATATCAGAGGAGCAGGGTGAAAAGTTGCCTAAGCCAGGGACCACATTTGATGGCGCTGCTACCAAACAATTCACAAGAAAAGGGCTTACTgtaagtcagttaatattgcttgttaccgtcattcattttgctggtggttctcatgcataaaatttctcatgagggatcctttgttcatgtcag
species | Oryza sativa |
transcript | LOC_Os06g05130.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCACATTTGATGGCGCTGCTACCAAACAATTCACAAGAAAAGGGCTTACT CCGAAGTGGAGTGACCTTGATGTCAACCAGCATGTGAACAATGTGAAGTATEST: gi|27547066|gb|CA765189.2|CA765189
genomic: CCACATTTGATGGCGCTGCTACCAAACAATTCACAAGAAAAGGGCTTACTgtaagtcagt ... ttcatgtcagCCGAAGTGGAGTGACCTTGATGTCAACCAGCATGTGAACAATGTGAAGTAT
EST: CCACATTTGATGGCGCTGCTACCAAACAATTCACAAGAAAAGGGCTTACT CCGAAGTGGAGTGACCTTGATGTCAACCAGCATGTGAACAATGTGAAGTATEST: gi|38476530|gb|CF960663.1|CF960663
genomic: CCACATTTGATGGCGCTGCTACCAAACAATTCACAAGAAAAGGGCTTACTgtaagtcagt ... ttcatgtcagCCGAAGTGGAGTGACCTTGATGTCAACCAGCATGTGAACAATGTGAAGTAT
EST: CCACATTTGATGGCGCTGCTACCAAACAATTCACAAGAAAAGGGCTTACT CCGAAGTGGAGTGACCTTGATGTCAACCAGCATGTGAA
genomic: CCACATTTGATGGCGCTGCTACCAAACAATTCACAAGAAAAGGGCTTACTgtaagtcagt ... ttcatgtcagCCGAAGTGGAGTGACCTTGATGTCAACCAGCATGTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGTTCTGCTATATCAGAGGAGCAGGGTGAAAAGTTGCCTAAGCCAGGGACCACATTTGATGGCGCTGCTACCAAACAATTCACAAGAAAAGGGCTTACTgtaagtcagttaatattgcttgttaccgtcattcattttgctggtggttctcatgcataaaatttctcatgagggatcctttgttcatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA