Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatgagccactaaatcgcgcatatgttggtatgttgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag

Basic information

species Oryza sativa
transcript LOC_Os06g05080.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g05080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA13G43980.1 (Glycine max), 5'ss of exon 4
AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatgagccactaaatcgcgcatatgttggtatgttgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag
| |  ||||||||||| || ||||||||| ||||||||||||||||    |||||||| || ||| | ||||||||   |||| ||||  | |  |  ||    || |   |||  |       ||| || |      ||      | |     | ||||    |||  ||  | ||||    |||                             
AAGGTGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTATAGAATGCCCAGTGTGCTCACAGTATTTTAAGgtaagttgagaatcacattta--gaattttattgaataccattggcacttaccatgatagatttggagtt----aaatgtcaacatgc-gtgattatgtagattgaa----------------------------

upper sequence: LOC_Os06g05080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA08G22410.1 (Glycine max), 5'ss of exon 5
AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatgagccactaaatcgcgcatatgttggtatgt--tgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag
|||| ||||||||||| || ||||||||| ||||||||| |||||| || ||||| || || ||| | ||||||||    ||| |||  || |  || ||   | ||| ||||    ||| | ||   |||      |||  | | |||    |||   || ||||||  ||| |||||  |                                   
AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcataatgactttt---agaatagcttctactgttacagtgtttttgtggggagagaatcaatgaatcattgtttagtatgtcttgttctgatactt----------------------------------

upper sequence: LOC_Os06g05080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA15G01360.2 (Glycine max), 5'ss of exon 4
AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatgagccactaaatcgcgcatatgttggtatgttgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag
| || ||||||||||| || ||||||||| ||||||||||||||||  | ||||| || || ||| | ||||||||   |||| ||||  | |  |  ||    || ||  ||    | |  |     | |   |||||   |||         | ||||    || | ||  | || |    |||                             
AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAGgtaagttgagaatcacattta--gaattctattagtatctttgc---ctcttaccatgatagacttgg--agttaaatgtcaacatat-gtgattatttagattgaaa---------------------------

upper sequence: LOC_Os06g05080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA07G03680.1 (Glycine max), 5'ss of exon 5
AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatgagccactaaatcgcgcatatgttggtatgttgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag
|||| ||||||||||| || ||||||||| ||||||||| |||||| |||||||| || || ||| | ||||||||    ||| |||  || |  || ||   | |||  |||    ||| | ||   |||      |||      ||||    ||   |    || ||    | ||||    || ||| | |                      
AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcataatgactttt---agaatatcttctactgttacagtgtttttgaggggagttga-gaatca---atgaatcatcatttt----ttatgtct--tgtgctgtta----------------------

upper sequence: LOC_Os06g05080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA07G03680.3 (Glycine max), 5'ss of exon 5
AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatgagccactaaatcgcgcatatgttggtatgttgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag
  || ||||||||||| || ||||||||| ||||||||| |||||| |||||||| || || ||| | ||||||||    ||| |||  || |  || ||   | |||  |||    ||| | ||   |||      |||      ||||    ||   |    || ||    | ||||    || ||| | |                      
--GATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcataatgactttt---agaatatcttctactgttacagtgtttttgaggggagttga-gaatca---atgaatcatcatttt----ttatgtct--tgtgctgtta----------------------

upper sequence: LOC_Os06g05080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA08G22410.2 (Glycine max), 5'ss of exon 4
--------------------AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatgagccactaaatcgcgcatatgttggtatgt--tgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag
                    |||| ||||||||||| || ||||||||| ||||||||| |||||| || ||||| || || ||| | ||||||||    ||| |||  || |  || ||   | ||| ||||    ||| | ||   |||      |||  | | |||    |||   || ||||||  ||| |||||  |                                   
ACGACTTGTTTTGATTTCAGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTTgtaagttcataatgactttt---agaatagcttctactgttacagtgtttttgtggggagagaatcaatgaatcattgtttagtatgtcttgttctgatactt----------------------------------

upper sequence: LOC_Os06g05080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT3G15640.1 (Arabidopsis thaliana), 5'ss of exon 5
AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttg--gtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatg---agccactaaatcg-cgcatatgttggtatgtt-gtcctgatgttcgctgagctatc-aacttgcaactttatgttcacag------------------
|||||||||| ||||| || ||||| ||| |||||||||| ||| |   ||||||||| || ||||||||||| ||   |||| ||    ||  | || | |     | ||  |       |      |   |||   |    || ||       | || || |||       || |  |      ||  | |||| || || |   ||  ||   ||    |                  
AGGACGAGCACGATGTTGTCTGGTTCTGGCTGGAGAAAGGAAAGTCCTTTGAATGCCCGGTTTGCACTCAGTACTTTGAGgtaagtgaaagtcgtatcagatactctactcagtaaataaatcgacctagcctctcatttcatagtcataggccagacgaatctgtcaaaggattagagcaagaactcattaagctttcgaattcagaatattgaattggttgaataatgtatgcttgcag

upper sequence: LOC_Os06g05080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT1G80230.1 (Arabidopsis thaliana), 5'ss of exon 5
AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtg-agagcaatttctgcat-gagccactaaatcgcgcatatgttggtatgttgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag
|||| ||||||||||| || ||||||||| |||||||||||||| |   |||||||||||| || || ||||| |||  |||  |     |     |  |    |  |   || || ||   |  | |  ||  |||| || | ||| | |  |||| |    | | || |     |  |                                     
AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTTGAATGCCCTGTGTGTACACAGTACTTCAAGgttagccataaaagcatacta--gatttgattttccatggatattgtacgttaggcattgatcaactgattaacgcaaa--acgatttggtaatacgtag-------------------------------------

upper sequence: LOC_Os06g05080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv09s0002g06000.t01 (Vitis vinifera), 5'ss of exon 5
AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatgagccactaaatcgcgcatatgttggtatgttgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag
|||| ||||||||||| || ||||||||| |||||||||||||| |||||||||||||||| ||| | ||||||||| ||||| ||||    |  |   |||    ||| ||     | | ||  |  ||   ||||     |      | |    || | | ||||  |   | ||||                                    
AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgaggataacacctgaactgatcactaattattt-agtcctgttctggcatagatgaaggtgactc-tggatttggatatgaagcttt-atgtctat--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86512602|gb|CI155235.1|CI155235
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|38478025|gb|CF962158.1|CF962158
EST:     TGGAGAGAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88535758|gb|CI465464.1|CI465464
EST:     GAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: GAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|86511030|gb|CI153663.1|CI153663
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88484171|gb|CI421442.1|CI421442
EST:     CACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: CACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|86546126|gb|CI186332.1|CI186332
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88227206|gb|CI228319.1|CI228319
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|86600998|gb|CI356755.1|CI356755
EST:     CCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: CCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|86599818|gb|CI255980.1|CI255980
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88483217|gb|CI420488.1|CI420488
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTTTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|86432882|gb|CI086493.1|CI086493
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|27920981|gb|CB096789.1|CB096789
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|86854015|gb|CI252006.1|CI252006
EST:     TGGAGAAAGGCAAGCCACATGAAAGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|14713858|gb|AU197818.1|AU197818
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88205449|gb|CI205298.1|CI205298
EST:     TGGAGAAAGGCAAGCCACATGAAAGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88242794|gb|CI240645.1|CI240645
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88504386|gb|CI431892.1|CI431892
EST:     AGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: AGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88533361|gb|CI460913.1|CI460913
EST:     TGGAGAAAGGCAAGCCACATGAATTCCCTGTGTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|87005687|gb|CI284704.1|CI284704
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CCTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|25996302|gb|CA767047.1|CA767047
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|86512611|gb|CI155244.1|CI155244
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|87018425|gb|CI252179.1|CI252179
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|38482983|gb|CF966785.1|CF966785
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88206913|gb|CI205229.1|CI205229
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88545123|gb|CI474661.1|CI474661
EST:     GGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATNACGAC
genomic: GGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|86497846|gb|CI140479.1|CI140479
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|58600462|gb|CK010990.1|CK010990
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGAT
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGAT
EST: gi|33678651|gb|CF306890.1|CF306890
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|55410434|gb|CV722810.1|CV722810
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|88474503|gb|CI411774.1|CI411774
EST:     CTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: CTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|4716340|gb|AU057456.1|AU057456
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
EST: gi|86822729|gb|CI251809.1|CI251809
EST:     TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG                         CTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC
genomic: TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 56 (downstream exon)
Score: 7

AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggt ... atgttcacagCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAAC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGgtatgttggtactttctgttgacaaaatcgcttgccttgtgagagcaatttctgcatgagccactaaatcgcgcatatgttggtatgttgtcctgatgttcgctgagctatcaacttgcaactttatgttcacag

- - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - -  GGAGAA