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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCGACCGGTACTGGTATTGCCCCGTTCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgttgcatcattagttttcagactttatgcttgtttcaaaatcttaaaattcatactttatttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os06g01850.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 5
CTTGCGACCGGTACTGGTATTGCCCCGTTCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgttgcatcattagttttcagactttatgcttgtttcaaaatcttaaaattcatactttatttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcag
||||| |||||||| ||||| || |||||||| || ||| ||||||| ||||| ||||||||| |||| |||||||||||||       ||| |  |  | |  ||     |  || |    | |||   |||  | ||   | |      |   ||                                            
CTTGCCACCGGTACAGGTATCGCTCCGTTCCGATCGTTCCTGTGGAAGATGTTCTTTGAGAAGCATGACGACTACAAGgtacaggcag-gcagcggtgttgtaaagttcacacactggacagagaatggcaaa--taatgtgtgagccgctcttgtgcag-----------------------------------------

upper sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA11G08230.1 (Glycine max), 5'ss of exon 6
CTTGCGACCGGTACTGGTATTGCCCCGTTCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgttgcatcattagttttcagactttatgcttgtttcaaaatc-ttaaaattcatactttatttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcag
 | || || || || || |||||||| ||||||||||| || ||||||||||| ||||||||| ||||||| |||||||||   |  || ||   | | |     || | || |||||  ||| ||   ||| |||| |  | | || | |  |  | ||   ||  | |    |||  |||     |||            
TTGGCAACTGGAACAGGAATTGCCCCATTCCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCATGATGATTACAAGgta---agtttacac--tgaat----ggagtata-gcttgaatcagaactattataattaagtcgtaatgtataaagctcataaattagtctacagtaa--aatgaacttga------------

upper sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 6
CTTGCGACCGGTACTGGTATTGCCCCGTTCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgttgcatcattagttttcagactttatgcttgtttcaaaatcttaaaattcatactttatttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcag
 | |  || || || || |||||||| || |||||||| || ||||||||||| ||||||||| | || || |||||||||    |    ||  | || | | |  | |     ||||| |  | |||  | ||  ||||          | |    | |  | | |   || || |    ||    |||||         
TTGGGAACTGGAACCGGGATTGCCCCATTTCGCTCATTTTTATGGAAAATGTTCTTTGAGAAGCACGAAGATTACAAGgtaagtgttccccaaaactaatatccttatt---cacttgtatgtagatc--agaaaccataa---------caaggacaatagtatgtagattgtagagtgcata-acgaactt--------

upper sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT1G20020.3 (Arabidopsis thaliana), 5'ss of exon 6
CTTGCGACCGGTACTGGTATTGCCCCGTTCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgttgcatcattagttttcagactttatgct---tgtttcaaaatcttaaaattcatactttatttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcag
||||| || || || || ||||| || ||| | || ||||| ||||| ||||| ||||||||  |||||||||||||||||       |  || ||||  |||  || |||   |    ||| | ||||||| || ||   | |   | |  |   ||||                                            
CTTGCCACAGGGACAGGAATTGCTCCTTTCAGGTCTTTCTTATGGAAGATGTTCTTTGAGAAACATGATGACTACAAGgtaa----agtaaatgattatctttttgattttgaccaaaatgtattaaaatct-aacatctttgc---aatcgttggaatgcag-----------------------------------------

upper sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 5'ss of exon 6
CTTGCGACCGGTACTGGTATTGCCCCGTTCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgttgcatcattagttttcagactttatgcttgtttcaaaatcttaaaattcatactttatttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcag
||||| || || ||||| ||||| || |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||        ||| | ||  | |     ||  |||    |      | |  |||||  | |    |  | |||||   | |  |     || |  |||||| |  |   ||  ||       
CTTGCAACTGGAACTGGAATTGCTCCTTTCCGCTCATTCTTGTGGAAAATGTTCTTTGAGAAGCATGAAGACTACAAGgta------gggcaactttgatatgtctgctacatgggcatgc----accggaaaatgaaga----aaatgtccaatctaatcctgaacatggta-aaacaaca-atcctaatgct-------

upper sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 6
CTTGCGACCGGTACTGGTATTGCCCCGTTCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgttgcatcattagttttcagactttatgcttgtttcaaaatcttaaaattcatactttat--ttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcag
||||| || |||||||| ||||| || || ||||||||||||||||||||||| || ||||| ||||| ||||||||||||   |||    |||| ||| ||              ||| |||||    | || |    |  || |  |  |   |  || || ||||    | | |  ||                      
CTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATGTTCTTCGAGAAATATGAAGACTACAAGgta--gatgagatatcaatagatta-------------tgtatcaaagcactgaattgtgaatcttgtgatcatgttagagacttgtttcaacttgtcatgcag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29657697|gb|CB653972.1|CB653972
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|38476629|gb|CF960762.1|CF960762
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86253303|gb|CI058228.1|CI058228
EST:     TCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86524406|gb|CI164612.1|CI164612
EST:     TTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|88201693|gb|CI202048.1|CI202048
EST:     TTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86517850|gb|CI158056.1|CI158056
EST:     TCCGCTTATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86521026|gb|CI161232.1|CI161232
EST:     TCCGCTTATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|88980632|gb|CI026694.1|CI026694
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|29659028|gb|CB655303.1|CB655303
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|38475687|gb|CF959820.1|CF959820
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTGTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86902962|gb|CI312339.1|CI312339
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTC-TGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86536909|gb|CI177115.1|CI177115
EST:     TGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|87019948|gb|CI299346.1|CI299346
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|58695210|gb|CK083897.1|CK083897
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|29683077|gb|CB679352.1|CB679352
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86250594|gb|CI003712.1|CI003712
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86420526|gb|CI056515.1|CI056515
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|87025972|gb|CI257130.1|CI257130
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|29683657|gb|CB679932.1|CB679932
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|88832387|gb|CI019328.1|CI019328
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|33798466|gb|CF325091.1|CF325091
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|29685686|gb|CB681961.1|CB681961
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|29685685|gb|CB681960.1|CB681960
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86252076|gb|CI055813.1|CI055813
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|87012717|gb|CI295161.1|CI295161
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|86253156|gb|CI058081.1|CI058081
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|87026011|gb|CI257169.1|CI257169
EST:     TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
EST: gi|88844088|gb|CI001145.1|CI001145
EST:     TTTTTTGAGAAGTATGATGACTACAAG                         TTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA
genomic: TTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 68 (downstream exon)
Score: 176

CTTGCGACCGGTACTGGTATTGCCCCGTTCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgt ... tcttgtgcagTTCAATGGTCTGGCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGCGACCGGTACTGGTATTGCCCCGTTCCGCTCATTCTTGTGGAAAATGTTTTTTGAGAAGTATGATGACTACAAGgtaccaatgttgcatcattagttttcagactttatgcttgtttcaaaatcttaaaattcatactttatttctccaaatgatttttttctttgttttaaacaatatgtgtgaactcttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT