1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGCAGCAAATAATTGTTCTAGTAGCGTAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGgtaagctgcctgtttcactgcatgcatttcccctccagagtttctacacagaattctaaatggtccaacataaggggtttatatattgtgtaagtgtgtt...
species | Oryza sativa |
transcript | LOC_Os06g01670.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCAACTTCTGAGGCAGTTGAGCAAGAGATCATGCTTCCAACGCTGCGTG CCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|29664971|gb|CB661246.1|CB661246
genomic: TCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGgtaagctgcc ... aaatttgcagCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATC
EST: TCCAACTTCTGAGGCAGTTGAGCAAGAGATCATGCTTCCAACGCTGCGTG CCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|29665005|gb|CB661280.1|CB661280
genomic: TCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGgtaagctgcc ... aaatttgcagCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATC
EST: TCCAACTTCTGAGGCAGTTGAGCAAGAGATCATGCTTCCAACGCTGCGTG CCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|117235846|gb|CT847813.1|CT847813
genomic: TCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGgtaagctgcc ... aaatttgcagCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATC
EST: TCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTG CCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATEST: gi|29625024|gb|CB630035.1|CB630035
genomic: TCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGgtaagctgcc ... aaatttgcagCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGAT
EST: TCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTG CCATGCCCGACTTTGCTCCAGTATACAACTTCCTGGGAAGCATATTTGATC
genomic: TCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGgtaagctgcc ... aaatttgcagCCATGCCAGACTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCAGCAAATAATTGTTCTAGTAGCGTAGAGAGCCAATCTGGAACTTGTCCAACTTCTGAGGCAATTGAGCAAGAGATCATGCTTCCAACGCTGCGTGgtaagctgcctgtttcactgcatgcatttcccctccagagtttctacacagaattctaaatggtccaacataaggggtttatatattgtgtaagtgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc