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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCCTCCACATCAGGAAATCGGAATGCCTTCACTCTCCCCTACCATGACTGAGgtacaatactcaacagctgaaattgaataaataaataaaatcatggcatcatggcaaagagaaaattaaaggatgagcagtgtcatgtatctcttgagttgcctttatcatgtcaaacttattaaattgcctgtag

Basic information

species Oryza sativa
transcript LOC_Os06g01630.6
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g01630.5 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA07G03930.1 (Glycine max), 5'ss of exon 6
ATTTGCCTCCACATCAGGAAATCGGAATGCCTTCACTCTCCCCTACCATGACTGAGgt----acaatactcaacagctgaaattgaataaataaataaaatcatggcatcatggcaaagagaaaattaaaggatgagcagtgtcatgtatctcttgagttgcctttatcatgtcaaacttattaaattgcctgtag
|| | || ||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||    || ||  | | |   ||| ||||      || |     |||||   ||    |  | |  |     || |||   |||                                                        
ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctactattttaatcttatgagattg---ctgtatagtgggtcatgatttct---cctaaattattcccaatgatattcag--------------------------------------------------------

upper sequence: LOC_Os06g01630.5 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA16G00590.1 (Glycine max), 5'ss of exon 6
ATTTGCCTCCACATCAGGAAATCGGAATGCCTTCACTCTCCCCTACCATGACTGAGgtacaatactcaacagctgaaattgaataaataaataa--aatcatggcatcatggcaaagagaaaattaaaggatgagcagtgtcatgtatctcttgagttgcctttatcatgtcaaacttattaaattgcctgtag
|| | || ||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||| |     |       |   ||   ||   |  |||     |||||   ||    |  | |  |   | |  |||  ||||                                                        
ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctacttttctgaatcttatgagattgctgtatagtgggtcatgatttct---cctaaattattctcactgatacgcag--------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669994|gb|CK058680.1|CK058680
EST:     CTTCACTCTCCCCTACCATGACTGAG                         GGAAACATTGCAAGGTGGGTGAAGAAAGAAGGAGATAAAGTCTCACCTGGT
genomic: CTTCACTCTCCCCTACCATGACTGAGgtacaatact ... ttgcctgtagGGAAACATTGCAAGGTGGGTGAAGAAAGAAGGAGATAAAGTCTCACCTGGT