1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCATTGGAACCTACCAAGACTGGTGTGAGGCTTTCTCAACGTATCCGAGGACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaagaactgtgtggtgtgtccagtttatcaaggctttaaaccgtcccttttttttccctgtagagttcaaatgtatcgtgtttctggttcattt...
species | Oryza sativa |
transcript | LOC_Os06g01450.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TATCAGGACAG GTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGAEST: gi|58596411|gb|CK006939.1|CK006939
genomic: TATCAGGACAGgtaatgcaag ... tgggtttcagGTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGA
EST: ACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAG GTGTGACGTAACATACATTCTCCEST: gi|88839085|gb|CI378009.1|CI378009
genomic: ACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaag ... tgggtttcagGTGTGACGTAACATACATTCTCC
EST: ACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAG GTGTTACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGAEST: gi|88849225|gb|CI087747.1|CI087747
genomic: ACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaag ... tgggtttcagGTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGA
EST: TGCTGATAAAATATTCAGCTTTGATCAGGACAG GTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGAEST: gi|86828210|gb|CI276816.1|CI276816
genomic: TGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaag ... tgggtttcagGTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGA
EST: ACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAG GTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGAEST: gi|86431444|gb|CI085055.1|CI085055
genomic: ACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaag ... tgggtttcagGTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGA
EST: TCCATGCTGATAAAATATTCAGCTTTTATCAGGACAG GTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGAEST: gi|89181593|gb|CI113099.1|CI113099
genomic: TCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaag ... tgggtttcagGTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGA
EST: ACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAG GTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGAEST: gi|89181466|gb|CI112972.1|CI112972
genomic: ACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaag ... tgggtttcagGTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGA
EST: TTTTATCAGGACAG GTGTGACGTTACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCTTGA
genomic: TTTTATCAGGACAGgtaatgcaag ... tgggtttcagGTGTGACGTAACATACATTCTCCTGGAGATGGACCGGATTCTAAGGCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATTGGAACCTACCAAGACTGGTGTGAGGCTTTCTCAACGTATCCGAGGACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaagaactgtgtggtgtgtccagtttatcaaggctttaaaccgtcccttttttttccctgtagagttcaaatgtatcgtgtttctggttcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtccc