1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGgcatgttccttaacacgttgaactattctcattattatgctactccaaaagagtccttatgaaaatgtctcttttttttttgtgaataaatcagtacaag...
species | Oryza sativa |
transcript | LOC_Os05g48160.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAG GTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTEST: gi|86528962|gb|CI169168.1|CI169168
genomic: GGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGgcatgttcct ... attttcgcagGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGT
EST: GGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAG GTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTEST: gi|88991329|gb|CI034664.1|CI034664
genomic: GGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGgcatgttcct ... attttcgcagGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGT
EST: GGCTTGCTTGTCAGACTATTGGTTGGAAACAAGAGAAAATTCCGGGCAAG GTTGTCGTCCAACAGTCTGCCACCAGTGGAAAAAATGATTGTAGTGCACA
genomic: GGCTTGCTTGTCAGACTATT-GTTGGAAACAA-AGAAAATTCC-GGCAAGgcatgttcct ... attttcgcagGTTGTCGTCCAAC-GTCTGCC-CCAGTGGAAAAAATGATTGTAGTGCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGgcatgttccttaacacgttgaactattctcattattatgctactccaaaagagtccttatgaaaatgtctcttttttttttgtgaataaatcagtacaag
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA