1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTGTCGTCTTGCCTCTGCTTATTGCAGCGATGGTTGGGGTCTCAAGGGTGGATGACTACTGGCACCATTGGCAGGACGTGTTTACCGGTGGAATTCTTGgtaggtttgcatgaaagatcagagctgcctttcacctgctacaaattcctctttttcagagcacgatatcatactgtcatgttggcttcactctgcag
species | Oryza sativa |
transcript | LOC_Os05g47660.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGATGACTACTGGCACCATTGGCAGGACGTGTTTACCGGTGGAATTCTTG GATTGGTGGTTGCTTCCTTCTGCTACCTTCAGTTCEST: gi|25777854|gb|CA752604.1|CA752604
genomic: GGATGACTACTGGCACCATTGGCAGGACGTGTTTACCGGTGGAATTCTTGgtaggtttgc ... cactctgcagGATTGGTGGTTGCTTCCTTCTGCTACCTTCAGTTC
EST: GGATGACTACTGGCAC-ATTGGCAGGACGTGTTTACCGGTGGAATTCTTG GATTGGGTGGTTGCTTCCTTCTGCTACCTTCAAT-CT-CCCAACAACTGCT
genomic: GGATGACTACTGGCACCATTGGCAGGACGTGTTTACCGGTGGAATTCTTGgtaggtttgc ... cactctgcagGATTGG-TGGTTGCTTCCTTCTGCTACCTTCAGTTCTTCCCACCACCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTCGTCTTGCCTCTGCTTATTGCAGCGATGGTTGGGGTCTCAAGGGTGGATGACTACTGGCACCATTGGCAGGACGTGTTTACCGGTGGAATTCTTGgtaggtttgcatgaaagatcagagctgcctttcacctgctacaaattcctctttttcagagcacgatatcatactgtcatgttggcttcactctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA