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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGATTAATTGTATGGTATGGCAGTAAGCTAAGCCTCAGTAGAGGATATAGTGGGGCGGATATCATGAACATCTTGTTTGGTATCATGATAGGTGCAAGgtaggtattgatgctaagaatccattcgaaatcagcagctaaattcaaccaatgggcctacattatattactctacaacaaattaatagcactagctaatattggtgcctgtatggaatttcacaaactcaagcttaattttcaacgcatcatggactatatttcctaacatgcacattttcaaatgtttggaatag

Basic information

species Oryza sativa
transcript LOC_Os05g47500.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g47500.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G843537_T01 (Zea mays), 5'ss of exon 5
TTGGATTAATTGTATGGTATGGCAGTAAGCTAAGCCTCAGTAGAGGATATAGTGGGGCGGATATCATGAACATCTTGTTTGGTATCATGATAGGTGCAAGgtaggtattgatgctaagaat-ccattcgaaatcagcagcta-aattcaaccaatgggcctacattatattactctacaacaaattaatagcactagctaatattggtgcctgtatggaatttcacaaactcaagcttaattttcaacgcatcatggac-tatatttcctaacatgcacat-tttcaaatgtttggaatag
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TTGGACTGATTATATGGTATGGCAGCAAGTTAAGCCTCACTAAAGGATACAGCGGAGCAGATATCCTAAATGTAATGTTTGCAATCATGATAGGTGCAAGgtgagcactgatgctgaaaatgtcattctaa-----tagttataattcaacaaatag-catgccttgttctagcattttacccgtaagaagc-tta--tagtagtggtatctgctttggat--catattctagtacttcagcacaacaaaatagatcacatctgtctgctaatatgaaattcttttaactgtttgagatag