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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGTGGTCTTCGTGCTAGTGTTCCATTTCTCCCCTCTATATGGGCAGTCAAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGTTCTCTTTCGgtaatgtcacttataccatcaattgcagtattcttggttgttttatgttttgaatgactttactctccctaatggtctgctaatgtttgtccatatattcag

Basic information

species Oryza sativa
transcript LOC_Os05g43790.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g43790.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G120175_T03 (Zea mays), 5'ss of exon 5
AGTGGTGGTCTTCGTGCTAGTGTTCCATTTCTCCCCTCTATATGGGCAGTCAAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGTTCTCTTTCGgtaatgtcacttataccatcaattgcagtattct-tggttgttttat-----gttttgaatgactttactctcc-----ctaatggtc-tgctaatgtttgtccata---tattcag
 ||| | || || || || |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||    ||    | |||| |   |||||  |     || ||||   | | || ||| |     |||  | |  ||||||  |||   |      |||||||
TGTGATTGTTTTTGTCCTGGTGTTCTATTTCTCCCCTCTCTATGGGCAGTCCAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGCTCTCTTTCGgtaatgtcacttctgccagtggttcatatgttctctaaatgtttagtcgattgtattgatgtattctaatctactcgtgctagggattgtgctaactttttctctctcattattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218503663|gb|FG954349.1|FG954349
EST:     CAAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGTTCTCTTTCG                         GTAATGAGTGTTAAAGCTCTTGGTACATCCTTAAAGTTGACGTTCGAGGGG
genomic: CAAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGTTCTCTTTCGgtaatgtcac ... atatattcagGTAATGAGTGTTAAAGCTCTTGGTACATCCTTAAAGTTGACGTTTGAGGGG
EST: gi|33662767|gb|CF293734.1|CF293734
EST:     CAAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGTTCTCTTTCG                         GTAATGAGTGTTAAAGCTCTTGGTACATCCTTAAAGTTGACGTTTGAGGGG
genomic: CAAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGTTCTCTTTCGgtaatgtcac ... atatattcagGTAATGAGTGTTAAAGCTCTTGGTACATCCTTAAAGTTGACGTTTGAGGGG