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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCTTGGTCTAGGTGAGACAGATGAAGAGGTGAAGCAAACCATGTGTGATTTGAGGGCCATTGACGTTGATATTCTGACCTTGGGACAATATTTACAGgtttgatctttgagcaactttgccagcgctttttatatcctcctggacttcctttgttcttgttgttgtatcatccaatgctccttgcttatacag

Basic information

species Oryza sativa
transcript LOC_Os05g43576.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g43576.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA10G42600.1 (Glycine max), 5'ss of exon 7
CATGCTTGGTCTAGGTGAGACAGATGAAGAGGTGAAGCAAACCATGTGTGATTTGAGGGCCATTGACGTTGATATTCTGACCTTGGGACAATATTTACAGgtttgatctttgagcaactttgccagcgctttttatatcctcctggacttcctttgttcttgttgttgtatcatccaatgctccttgcttatacag--------
 ||||| || || || || || ||||| ||||||||| || | |||  |||||| ||||||||||| ||||||||| |||| || || |||||||| |||||| | | | | |   |||||   |  | |||  ||| ||| ||   |     ||          |   |  |||| || | || |||||| | |         
AATGCTGGGCCTTGGAGAAACTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATTGATGTTGATATTGTGACATTTGGTCAATATTTGCAGgttagttatgtaaaatacttt---aatggtttccata-cctgcttctcacagattagaaaccaaatctcaaaatcctatccaccatgcttacagatggtgctaa

upper sequence: LOC_Os05g43576.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA20G24430.1 (Glycine max), 5'ss of exon 5
CATGCTTGGTCTAGGTGAGACAGATGAAGAGGTGAAGCAAACCATGTGTGATTTGAGGGCCATTGACGTTGATATTCTGACCTTGGGACAATATTTACAGgtttgatctttgagcaactttgccagcgctttttatatcctcctggacttcctttgttcttgttgttgtatcatccaatgctccttgcttatacag-----
 ||||| || || || ||  | ||||| ||||||||| || | |||  |||||| |||||||| |||||||||||||||||  | || |||||||| |||||||| |  |    ||| |     |  | |||  | | ||| ||   | |   ||          |   |  |||| || |  | |||||| | |      
AATGCTGGGCCTTGGAGAATCTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATCGACGTTGATATTCTGACACTTGGTCAATATTTGCAGgtttgttaatgtcacaaatactttaatggtttccaga-cctgcttctcgtagattagaaaccaaatctcaaaatcccatccatcatgcttacagatggtgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88906312|gb|CI375384.1|CI375384
EST:     ATTTGAGGGCCATTGACGTTGATATTCTGACCTTGGGACAATATTTACAG                         CCAACAGAAAGACACTTGCGGGTCAGAGAATATGTGACTCCTGAGAAGTTT
genomic: ATTTGAGGGCCATTGACGTTGATATTCTGACCTTGGGACAATATTTACAGgtttgatctt ... gcttatacagCCAACAGAAAGACACTTGCGGGTCAGAGAATATGTGACTCCTGAGAAGTTT
EST: gi|88247674|gb|CI247523.1|CI247523
EST:     ATTTGAGGGCCATTGACGTTGATATTCTGACCTTGGGACAATATTTACAG                         CCAACAGAAAGACACTTGCGGGTCAGAGAATATGTGACTCCTGAGAAGTTT
genomic: ATTTGAGGGCCATTGACGTTGATATTCTGACCTTGGGACAATATTTACAGgtttgatctt ... gcttatacagCCAACAGAAAGACACTTGCGGGTCAGAGAATATGTGACTCCTGAGAAGTTT