1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATGGCATGTCCTGCCTTACCACTGTGCCCTCTAGCACAAACAGAAGCTGAACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAGgtatagtctgtcgtcttgtcacaaaatttgaacattgtgtgcatcggatccatgtcagttgacataatgttctctcattaatag
species | Oryza sativa |
transcript | LOC_Os05g42350.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAG GTTGGCATCAAGGACCATGAGTCGGTAGTGGTGAGGATAACAGGCTGCCCTEST: gi|29621655|gb|CB626666.1|CB626666
genomic: AACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAGgtatagtctg ... tcattaatagGTTGGCATCAAGGACCATGAGTCGGTAGTGGTGAGGATAACAGGCTGCCCT
EST: AACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAG GTTGGCATCAAGGACCATGAGTCGGTAGTGGTGAGGATAACAGGCTGCCCTEST: gi|5002798|gb|AU067907.1|AU067907
genomic: AACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAGgtatagtctg ... tcattaatagGTTGGCATCAAGGACCATGAGTCGGTAGTGGTGAGGATAACAGGCTGCCCT
EST: GAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAG GTTGGCATCAAGGACCATGAGTCGGTAGTGGTGAGGATAACAGGCTGCCCTEST: gi|66947260|gb|AU312104.1|AU312104
genomic: GAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAGgtatagtctg ... tcattaatagGTTGGCATCAAGGACCATGAGTCGGTAGTGGTGAGGATAACAGGCTGCCCT
EST: AACGANGGATTCTGCCGATTCTNNAACGAATTAGAGCAGTTTTTGATAAG GTTGGCATCAAGGACEST: gi|29625861|gb|CB630872.1|CB630872
genomic: AACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAGgtatagtctg ... tcattaatagGTTGGCATCAAGGAC
EST: AACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAG GTTGGCATCAAGGACCATGAGTCGGTAGTGGTGAGGATAACAGGCTGCCCT
genomic: AACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAGgtatagtctg ... tcattaatagGTTGGCATCAAGGACCATGAGTCGGTAGTGGTGAGGATAACAGGCTGCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGCATGTCCTGCCTTACCACTGTGCCCTCTAGCACAAACAGAAGCTGAACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAGgtatagtctgtcgtcttgtcacaaaatttgaacattgtgtgcatcggatccatgtcagttgacataatgttctctcattaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG