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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGGTCATGGTGCTATTTGGAAACTTGCATGTGATAGAGGTATATTCCAATGGCTTTACCAAAATGGCAGAAAAGGCGCAACTGTACGTCAAGTCAGgttatcctaagaatcaaatgtttgttaatcattgtcaaaacatattatttggaaaggaagtaactgtgcatgtcttgtaattttcag

Basic information

species Oryza sativa
transcript LOC_Os05g39230.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g39230.2 (Oryza sativa), 5'ss of exon 5
lower sequence: AC197705.4_FGT011 (Zea mays), 5'ss of exon 6
CTGGTGGTCATGGTGCTATTTGGAAACTTGCATGTGATAGAGGTATATTCCAATGGCTTTACCAAAATGGCAGAAAAGGCGCAACTGTACGTCAAGTCAGgttatcctaagaatcaaatgtttgttaatcat-tgtcaa--aacatattatttggaaaggaagtaactgtgcatgtc--ttgtaattttcag
||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |  |  |   |||||| ||||| ||||||||||| |||||||||||  |    |||| |  | ||| ||  |    ||||||  || | |  |||| || |||| ||||||||| || |   |||| ||||||||
CTGGTGGTCATGGTGCTATTTGGAAACTTGCATATGATAGAGGTGTACTCCAATGGTTACAAAATTGTGGCAGGAAAGGTGCAACTGTACGCCAAGTCAGgttgcctgctgaatgatttttttcttcttggggtgtcaatcaataaaacattttgacaggatgtaactgtggattttgtttgtcattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29689746|gb|CB686021.1|CB686021
EST:     CAATGGCTTTACCAAAATGGCAGAAAAGGCGCAACTGTACGTCAAGTCAG                         CAATGTTGTGGCTGCAACTGATTTAACACTGATGGCATTGGCAGGAATAGG
genomic: CAATGGCTTTACCAAAATGGCAGAAAAGGCGCAACTGTACGTCAAGTCAGgttatcctaa ... taattttcagCAATGTTGTGGCTGCAACTGATTTAACACTGATGGCATTGGCAGGAATAGG
EST: gi|58602199|gb|CK012727.1|CK012727
EST:     CAATGGCTTTACCAAAATGGCAGAAAAGGCGCAACTGTACGTCAAGTCAG                         CAATGTTGTGGCTGCAACTGATTTAACACTGATGGCATTGGCAGGAATAGG
genomic: CAATGGCTTTACCAAAATGGCAGAAAAGGCGCAACTGTACGTCAAGTCAGgttatcctaa ... taattttcagCAATGTTGTGGCTGCAACTGATTTAACACTGATGGCATTGGCAGGAATAGG