1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCTGATGTGTTGGGCCAGGTCATGCCTTTAGTTGGACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCAATAAAGgtgtgcttcagaatttattttagtttttgtttctctttattttaggaggatattctacccagttttgcaaatatgggtttctgatgttcttttattctcccaatcag
species | Oryza sativa |
transcript | LOC_Os05g38710.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCAATAAAG GAAAATGGATATCAACTATTATTCCTCAGTGCTAGAGCTATAGTTCAGGCAEST: gi|33657019|gb|CF279633.1|CF279633
genomic: GACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCAATAAAGgtgtgcttca ... tcccaatcagGAAAATGGATATCAACTATTATTCCTCAGTGCTAGAGCTATAGTTCAGGCA
EST: GACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCAATAAAG GAAAATGGATATCAACTATTATTCCTCAGTGCTAGAGCEST: gi|29646339|gb|CB651346.1|CB651346
genomic: GACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCAATAAAGgtgtgcttca ... tcccaatcagGAAAATGGATATCAACTATTATTCCTCAGTGCTAGAGC
EST: GACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCAATAAAG GAAAATGGATATCAACTATTATTCCTCAGTGCTA
genomic: GACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCAATAAAGgtgtgcttca ... tcccaatcagGAAAATGGATATCAACTATTATTCCTCAGTGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGATGTGTTGGGCCAGGTCATGCCTTTAGTTGGACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCAATAAAGgtgtgcttcagaatttattttagtttttgtttctctttattttaggaggatattctacccagttttgcaaatatgggtttctgatgttcttttattctcccaatcag
- - - - - - - - - - - - - - - - - - - - - TTGGAG