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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTGATACTGTTTTGCTTGGTGGCCGAGGTTTTGGAACAGCCATGTCTGCTCTAACTGACTACCTAAGTTCAGAGTATGGAACTACTTTTGCTTTGGgtatggtaacatatattcccaatgtgtgcattttttttaaatgattcttgtcagtcatgcattacttttctaagataagatgatgtacttgctgatatttttattaaatctttttagcctaactacattttttttttaaaaaaaattcaaacag

Basic information

species Oryza sativa
transcript LOC_Os05g37120.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37120.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G141735_T01 (Zea mays), 5'ss of exon 5
GAACCTGATACTGTTTTGCTTGGTGGCCGAGGTTTTGGAACAGCCATGTCTGCTCTAACTGACTACCTAAGTTCAGAGTATGGAACTACTTTTGCTTTGGgtatggtaacatatattcccaatgtgtgcattttttttaaatgattcttgtcagtcatgca-ttacttttctaag--ataagatgatgtac--ttgctgatatttttatta--aatcttttta-gcctaactacattttttttttaaaaaaaattcaaacag
|||   |||||||||||||||||  | || |||||||| ||||||||||||||| ||| ||| |||||||||||||| |||||  ||||||||||||| |||| |  |||| |  ||||  ||          |  | | ||   |  || || ||| ||| |||  ||  |||    ||||||| ||||   ||||  | |   |  | |  | | | | || || ||| |   |  | ||  |    | |     | |||
GAAGAGGATACTGTTTTGCTTGGCAGACGTGGTTTTGGGACAGCCATGTCTGCTTTAATTGAGTACCTAAGTTCAGAATATGGTTCTACTTTTGCTTTAGgtaggtgaacacactttccatat---------ctcatgagatatctggtgccattcaggcaattagcttcataactcgtaagatgctgtatctttgcaaacaacctagtaaccagtatctctatgcgtaattttttaatgttccttgtcatatggagagcag

upper sequence: LOC_Os05g37120.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G106140_T01 (Zea mays), 5'ss of exon 5
GAACCTGATACTGTTTTGCTTGGTGGCCGAGGTTTTGGAACAGCCATGTCTGCTCTAACTGACTACCTAAGTTCAGAGTATGGAACTACTTTTGCTTTGGgtatggtaacatatattcccaatgtgtgcattttttttaaatgattcttgtcagtcatgca-ttacttttctaag--ataagatgatgtac---------ttgctgatatttttatta--aatctttttagcctaactacattttttttttaaaaaaaattcaaacag
|||   ||| ||||||||||||| || || |||||||| ||||||||||||||| ||| ||| |||||||||||||  |||||  |||||||||||||||||  |   ||| |  ||||  ||          |  | ||||   |  ||||| ||| |||  ||  ||  |||   |||||||||||||          ||||  | | | |  | |  | | | ||||  |||| |   |||| ||  |    | |     | |||
GAAGAGGATGCTGTTTTGCTTGGCGGACGTGGTTTTGGGACAGCCATGTCTGCTTTAATTGAGTACCTAAGTTCAGGATATGGTTCTACTTTTGCTTTGGgtgagtggacacactttccatat---------ctcatgaaatatctggtgtcaatcaggcaactagcttaataactcataagatgatgtatgtttacactttgcaaacaatctagtaaccagtatctttatgctaatttacttttgttccttgtcatatggagagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33675080|gb|CF303319.1|CF303319
EST:     TGCTCTAACTGACTACCTAAGTTCAGAGTATGGAACTACTTTTGCTTTGG                         CTAGGGTATTTGCTTTTCTGTCTGGTGCTCCTGATTATGGAGATGGTCAAC
genomic: TGCTCTAACTGACTACCTAAGTTCAGAGTATGGAACTACTTTTGCTTTGGgtatggtaac ... attcaaacagCTAGGGTATTTGCTTTTCTGTCTGGTGCTCCTGATTATGGAGATGGTCAAC
EST: gi|29674495|gb|CB670770.1|CB670770
EST:     TGCTCTAACTGACTACCTAAGTTCAGAGTATGGAACTACTTTTGCTTTGG                         CTAGGGTATTTGCTTTTCTGTCTGGTGCTCCTGATTATGGAGATGGTCAAC
genomic: TGCTCTAACTGACTACCTAAGTTCAGAGTATGGAACTACTTTTGCTTTGGgtatggtaac ... attcaaacagCTAGGGTATTTGCTTTTCTGTCTGGTGCTCCTGATTATGGAGATGGTCAAC