1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACACAGTGGAATTTGGTCGCTCAACATCCTAACTTCAATAATATCACCCAGCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaatttacaaactgttctcctttatttaagaaaattggagtgcacttgtaatacgttcctttatctctctctctctctctctttctctgatgaagtttattccttctattttag
species | Oryza sativa |
transcript | LOC_Os05g32110.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGCEST: gi|58662260|gb|CK050940.1|CK050940
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGCEST: gi|29629257|gb|CB634268.1|CB634268
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGCEST: gi|58663803|gb|CK052489.1|CK052489
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGCEST: gi|58686271|gb|CK074958.1|CK074958
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGCEST: gi|58663197|gb|CK051883.1|CK051883
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGCEST: gi|24208701|gb|AU225728.1|AU225728
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATEST: gi|3061251|gb|C91883.1|C91883
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGAT
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGCEST: gi|87018181|gb|CI297394.1|CI297394
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGCEST: gi|29684532|gb|CB680807.1|CB680807
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGEST: gi|29657170|gb|CB653445.1|CB653445
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATG
EST: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAA ATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
genomic: GCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaat ... tctattttagATGATACTGCGATGTTCTGGGGAGTTAAGTTCTATAACGATTTGCTCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACAGTGGAATTTGGTCGCTCAACATCCTAACTTCAATAATATCACCCAGCTGTTTAGCTTCAACTACAAGCCACTTACTCCATATGGAAGCAAGATAAgtaagtcaatttacaaactgttctcctttatttaagaaaattggagtgcacttgtaatacgttcctttatctctctctctctctctctttctctgatgaagtttattccttctattttag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA