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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTACGGGGAGTCGATGGGCGGCGCGGTTGCGCTGCTGCTGCACCGCAAGGACCCAACCTTCTGGGACGGCGCCGTCCTCGTCGCGCCGATGTGCAAGgtttcacatggattctctctctctgtttctgttctgcatttctgttcttgctgaatttcagggcttggcacttggcagcaatctgatggcatatatggtatggctaaatttgattgatcgtgtttcag

Basic information

species Oryza sativa
transcript LOC_Os05g29974.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29974.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G306851_T01 (Zea mays), 5'ss of exon 6
CCTGTACGGGGAGTCGATGGGCGGCGCGGTTGCGCTGCTGCTGCACCGCAAGGACCCAACCTTCTGGGACGGCGCCGTCCTCGTCGCGCCGATGTGCAAGgtttcacatggattctctctctctgtttctgttctgcatttctgttcttgctgaatttcagggcttggcacttggcagcaatctgatggcatatatggtatggctaaatttgattgatcgtgtttcag
 || ||||| ||||| |||||||| || || || || ||||||||| | ||||| || |||||||||||||| || || || || ||||| |||||||||||   |            |    |    ||||  ||  ||   |  | ||||  | |    | | |  ||                                                          
TCTATACGGCGAGTCCATGGGCGGAGCCGTGGCTCTACTGCTGCACAGGAAGGATCCGACCTTCTGGGACGGTGCAGTTCTTGTGGCGCCAATGTGCAAGgtgctattccatactgaacctgattaaactgtcatggtttctggagcctgcttgaat----gacgttacag---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88416988|gb|CI573703.1|CI573703
EST:     AGGACC-AACCTTCTGGGACGGCGCCGTCCTCGTCGCGCCGATGTGCAAG                         ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAG
genomic: AGGACCCAACCTTCTGGGACGGCGCCGTCCTCGTCGCGCCGATGTGCAAGgtttcacatg ... cgtgtttcagATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAG
EST: gi|58609664|gb|CK037697.1|CK037697
EST:     AGGACCCAACCTTCTGGGACGGCGCCGTCCTCGTCGCGCCGATGTGCAAG                         ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAG
genomic: AGGACCCAACCTTCTGGGACGGCGCCGTCCTCGTCGCGCCGATGTGCAAGgtttcacatg ... cgtgtttcagATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAG
EST: gi|38469389|gb|CF953520.1|CF953520
EST:     CGTCCTCGTCGCGCCGATGTGCAAG                         ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAG
genomic: CGTCCTCGTCGCGCCGATGTGCAAGgtttcacatg ... cgtgtttcagATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAG
EST: gi|29656345|gb|CB652620.1|CB652620
EST:     AGGACCCAACCTTCTGGGACGGCGCCGTCCTCGTCGCGCCGATGTGCAAG                         ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAG
genomic: AGGACCCAACCTTCTGGGACGGCGCCGTCCTCGTCGCGCCGATGTGCAAGgtttcacatg ... cgtgtttcagATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAG