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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGATGATGTTCGCTATTGCTGCTCTGGAGCTGATGTCTGCATGGAGTGCTGGCCTTTAATGACCATTGCTATCAAAATCTTGGATGCTTCACTTAGAGgcatgttgttttgcaatgcaattaattaaacacacatgcaaacactcgcttttatttcagtttaattgacttgaattgcagatctttagtcaactattttcttggttagtttgacttgtaacaattgaaagtatgtgtttacag

Basic information

species Oryza sativa
transcript LOC_Os05g29010.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29010.2 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 5
TACGATGATGTTCGCTATTGCTGCTCTGGAGCTGATGTCTGCATGGAGTGCTGGCCTTTAATGACCATTGCTATCAAAATCTTGGATGCTTCACTTAGAGgcatgttgttt-tgca-atgcaattaattaaacaca-catgc---aaacactcgcttttatttcagtttaattgacttgaattgcagatctttagtcaactattttcttggttagtttgacttgtaacaattgaaagtatgtgtttacag
|| ||||||||| | ||||||||||| || |||||||| ||| |||| ||||||||| |||||||  | ||||| ||| |  | ||| || | || ||||| |   | | | ||   ||||| | || | |  | | | ||         || |  || |        | | |  |||   ||||||                                                               
TATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATACTGCCCTCAGAGgtagagtatatatgtgtatgcattcaactgagtataacgtgtttggtgttcttgtcttaaacatttcatgaatcccttttgttgcag---------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58662125|gb|CK050805.1|CK050805
EST:     CTGGCCTTTAATGACCATTGCTATCAAAATCTTGGATGCTTCACTTAGAG                         ATGATTTTGGTTTCAATCACATATTGTGGGTATATAGTGGTCGTCGGGGTG
genomic: CTGGCCTTTAATGACCATTGCTATCAAAATCTTGGATGCTTCACTTAGAGgcatgttgtt ... gtgtttacagATGATTTTGGTTTCAATCACATATTGTGGGTATATAGTGGTCGTCGTGGTG
EST: gi|58655471|gb|CK044151.1|CK044151
EST:     TGGCCTTTAATGACCATTGGTATCCAAATCTTGGATGCTTCACTTAGACG                         ATGATTTTGGTTTCAATCACATATTGTGGGTATATAGTGGTCGTCGTGGT
genomic: TGGCCTTTAATGACCATTGCTATCAAAATCTTGGATGCTTCACTTAGA-Ggcatgttgtt ... gtgtttacagATGATTTTGGTTTCAATCACATATTGTGGGTATATAGTGGTCGTCGTGGT