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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAACTGCAGCTGTCATGACAATCATACCAAAACTTGGCACAGGGGATGTTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAGgtgacatcttttgcaattgagagagatgccattattaagaactgtgaatatttctatgacatattgttgttttgtttggccag

Basic information

species Oryza sativa
transcript LOC_Os05g25310.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g25310.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G079236_T01 (Zea mays), 5'ss of exon 6
CACAACTGCAGCTGTCATGACAATCATACCAAAACTTGGCACAGGGGATGTTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAGgtgacatcttttgcaattgagagagatgccattat-taagaactgtgaatatttcta-tgacatattgttg---ttttgtttggccag
|||||||||||| |||||||||||  | |||||||||||||     |||||||||||||| ||||||||  |||||||||||||||||||||||| ||||||||  | | ||  || | | | | |||   || |  ||||  |||   ||| | || ||| ||  |||||   | ||||    ||||
CACAACTGCAGCAGTCATGACAATAGTCCCAAAACTTGGCATGAATGATGTTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAGgtgatgtatattttaactcataaacatgtagttttacaagagttgtcgctatctttaatgatatgatgttgacatgttgtcaatccag

upper sequence: LOC_Os05g25310.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G339336_T01 (Zea mays), 5'ss of exon 5
CACAACTGCAGCTGTCATGACAATCATACCAAAACTTGGCACAGGGGATGTTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAGgtgacatcttt--tgcaattgagagagatgccattat-taagaactgtgaatatttcta-tgacatattgttgttttgtttggccag
|||||||||||| |||||||||||  | ||||| |||||||     |||||||||||||| || |||||  ||||||||||||||||||||||||  ||||||| || | |  |  |||| | | | |||   || |  ||||  ||  | ||| | || ||| |   ||||||    |   |    
CACAACTGCAGCAGTCATGACAATAGTCCCAAACCTTGGCATGAATGATGTTTATCTGGCTTATCTTCCATTGGCTCATGTCTTTGAACTAGCAGGGGAGgtgatatatatattataattcatatacatgttgttttacaagagttgccactatctttaatgatacgatgttgtca-atccag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8857693|gb|AU095011.1|AU095011
EST:     TTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAG                         ACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTCAGCTCTGACT
genomic: TTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAGgtgacatctt ... gtttggccagACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTCAGCTCTGACT
EST: gi|88474061|gb|CI411332.1|CI411332
EST:     TTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAG                         ACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTCAGCTCTGACT
genomic: TTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAGgtgacatctt ... gtttggccagACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTCAGCTCTGACT
EST: gi|3763367|gb|AU030119.1|AU030119
EST:     TTTATCTGGNATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAG                         ACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTCAGCTCTGACT
genomic: TTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAGgtgacatctt ... gtttggccagACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTCAGCTCTGACT
EST: gi|33794084|gb|CF322932.1|CF322932
EST:     TTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAG                         ACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTCAGCTCTGACT
genomic: TTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTGAACTAGCAGCAGAGgtgacatctt ... gtttggccagACTGTCATGTTAGCTTCTGGTGCTGCCATTGGATATGGCTCAGCTCTGACT